YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACXC-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.97
Transmembrane Helix	61	82	0.89
Non-Cytoplasmic	83	88	0.83
Transmembrane Helix	89	112	0.88
Cytoplasmic	113	120	0.92
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	150	0.76
Transmembrane Helix	151	170	0.80
Cytoplasmic	171	176	0.67
Transmembrane Helix	177	198	0.86
Non-Cytoplasmic	199	214	0.71
Transmembrane Helix	215	233	0.79
Cytoplasmic	234	588	0.99
Transmembrane Helix	589	611	0.88
Non-Cytoplasmic	612	618	0.80
Transmembrane Helix	619	640	0.92
Cytoplasmic	641	677	0.91
Transmembrane Helix	678	697	0.93
Non-Cytoplasmic	698	722	0.95
Transmembrane Helix	723	744	0.90
Cytoplasmic	745	751	0.80
Transmembrane Helix	752	773	0.90
Non-Cytoplasmic	774	1130	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPRTNSRK SPLKRKRLRP CHLDYANERL WEHSYLREKC KELNLEEEYR YYQVRLMVSN  60
   61 LTIFYVLFII LAMSFLTIEL LYVQHYNAVF FNFVIRVVST ILVLTVLSIN FCEKFVSRHR 120
  121 WVMIASSVLS VYLVVLTDIV MISYHFYKND WPLNTSFDVF TLCMIYMFLP IPSIKGAALL 180
  181 ASSVSLIYVA FFMHSLTFNA VYTDRDSFGY DVISTDILHN LGFNMMGIFF RIMNDTMVRA 240
  241 SFLDRHQFIM EETWLRHALL QESILLDSIL PPQIAKPVQE KIKSKITQSE NSPDRFQMGP 300
  301 RTTESFMAIQ IHPDVSILYA DVVNYTHLTT TLTVGNLVKV LHDLYGRFDI AASNFKVQRI 360
  361 KFLGDCYYCV AGLTTPDPDH AKCCVSLGIS MISNIQEVRA ERGLDIDMRI GVHSGSLLAG 420
  421 IIGEAKLQFD IWGTDVEIAN HLESTGEPGY VHVSGRTLSM LNPADYTILS GTQKAQSDPV 480
  481 LQYIHTYLLT GQVARESFIT SIGGVRSSSV LEVKSIDRIR SSRPSQSSMT DEFREEFRNM 540
  541 PVGGINLNSP CCRRTRLDTH KKTQREIGIF CAAFKDSSLE WNYLHQPDFI FKSSMLLAWG 600
  601 IGCCLIYIQI VTNNFSCTAC IVVDLVTFFF LTSLLCLAWY KNVCWWKSGR YEFRIYGKYS 660
  661 CMAFHIFEKI QHSVSLRITV YLGILFSYYA VISLIMLNCD RDMYELSYIE SKIYHYEMDR 720
  721 DTCFHPWVFT NMISLILGIS YTFARIPFGL KIVISCCETL AYLLIVFFQF AFIFQHSATT 780
  781 TPFMKAELAH CLRVCMMLLT MYAKERQSEF NTKMNYKLNV DLQNKQKAAD LTNQSIIILL 840
  841 NNILPSHVVD LYLNSLAKHE LYYENYRMVS VMFAMLINFP MNLPSLRVLN DIITQFDRLL 900
  901 TAYREYYVVE KIKVVGCTYM AACGLDFNLA SNIRQTDHFR NSSLHVEVEH ARNHRMTDEN 960
  961 YDSDMNNDEV VFIMTTFALD LMRTLAACNR AYSSSFFERS LSQGKICIGI SSGEIMAGVV1020
 1021 GASQPHYDIW GNPVNMASRM ESTGLPGHIQ VTEESAKILQ EFDIKCIYRG MTFVKGRGDI1080
 1081 PTYFVGIDEN LKFMSAKLVN RSLSRRFSVM SSLDPDSLRK SSSSDQESGE