YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22946213, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	25	0.78
Non-Cytoplasmic	26	28	0.51
Transmembrane Helix	29	50	0.78
Cytoplasmic	51	69	0.52
Transmembrane Helix	70	94	0.80
Non-Cytoplasmic	95	132	0.63
Transmembrane Helix	133	154	0.85
Cytoplasmic	155	169	0.49
Transmembrane Helix	170	195	0.80
Non-Cytoplasmic	196	231	0.55
Transmembrane Helix	232	252	0.93
Cytoplasmic	253	269	0.52
Transmembrane Helix	270	291	0.87
Non-Cytoplasmic	292	324	0.56
Transmembrane Helix	325	347	0.84
Cytoplasmic	348	357	0.59
Transmembrane Helix	358	387	0.70
Non-Cytoplasmic	388	431	0.56
Transmembrane Helix	432	454	0.93
Cytoplasmic	455	459	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGAAAFIY MVFIPVAGIA SSKEISVSYY TDLIFFVYSA IFMGIMMDSS KLSDRLAFIV  60
   61 ISLVGGSLKF LQIFLTIAAA IVSILVNPTI SAAFWMKVSQ AVMVEYDNGG LIKLNSEEKP 120
  121 YEIGSKPYPT RPVIGIYLTC CYAASLAASL SPIVNPNGVI SDGFGGSLTV LEIGMLMAGP 180
  181 ALMGLVVMIF WLQVLFLGLL GGSVKRDLAE MAGAKAGFKQ TASERKQALG PWGIYPILAL 240
  241 SLILLMFLLV ATRKPRIFTG WDSINYKAES GLSVAGIGMS ILFFAIPANY IFCRYYVCRQ 300
  301 PEKEGPANSL LGWKAVNNNT PWAEIFMLGA AFSFSYSSAV CGLNTYLADS MNSDNKGFNM 360
  361 KSFICGALLG TLWTTLSPAT TVAKLALPTM VTAGNSFSLP FATALHNQFL LPVSSPANTI 420
  421 VAGWGNVRPF QFLLGGSILT LFMFCTIAGF TILFRTMVL