YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5037-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILFKGIRRV QSQLRTPVDL VLIRYSTAAT IASQDDKGVT TASPVSQAGK VQHLPDSQIT  60
   61 WMPSPYTMPG KTLSQYKKLS KFRLTSLVVI TTMGGYAMAP AAFDPTTFAM CTLGTGLVSA 120
  121 AANAINQYHE VPFDSQMSRT KNRVLVTGQM TPLHAVTFAA VSATAGLSML YFGVNGLTAA 180
  181 LGAGNLFLYT TIYTPMKRIS IVNTWVGSIV GAIPPLMGWA GCAATLDAGA MILAGVLYAW 240
  241 QFPHFNALSW NLRPDYSRAG YRMMAVTNPG LCRRTALRYS VAIVGLSAMA PVLDVTNYWF 300
  301 ALETLPLNAY FAYLAYKFHE KSDSGSSRKL FRFSLIHLPA LMLLFLTNKK EWYFSKPAGE 360
  361 ENKKESTYSA IKHSASSLGN VLPVAVAEGP R

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	100	0.92
Non-Cytoplasmic	101	105	0.74
Transmembrane Helix	106	126	0.84
Cytoplasmic	127	144	0.81
Transmembrane Helix	145	165	0.85
Non-Cytoplasmic	166	170	0.61
Transmembrane Helix	171	193	0.84
Cytoplasmic	194	200	0.84
Transmembrane Helix	201	223	0.83
Non-Cytoplasmic	224	227	0.63
Transmembrane Helix	228	250	0.78
Cytoplasmic	251	274	0.81
Transmembrane Helix	275	302	0.66
Non-Cytoplasmic	303	329	0.51
Transmembrane Helix	330	348	0.70
Cytoplasmic	349	391	0.52