YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Scgalpha-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLNLIVVV LALICNEVQG LKLQANVGEL FTYKIEPQLF NWTHQVISQQ FRYRPSLKNY  60
   61 PDLPSWMRYM YSHEYHAGFL YGTPPASSAG KDLSLDVVAL NRQNYETRRV VVTMFVAHKF 120
  121 PTPNVVQMKI NNLNWVHLMD PGRRENLRNI FRNDLWPNSK EDLSVVFMES AVNMGGRLPL 180
  181 RPQQREGVIV HVGSFAQFSP RLQELQEEVR PLYKLPSCTY KRTSVQKIFE NVGFKLDWCA 240
  241 FRMVGMESPT EILFHSGKQN EQQMPDDLNQ RQEDRWMGIA REDVPERNYI DEFAFAFAIP 300
  301 GMIFAILIGM LSAVLCFQHE KFYDPHSEFF FANIFHICEE SCAPQSASSD SGADDGSESS 360
  361 SNSDYPMAST VQMVQCSDSK SNQPITTLKS LKDPNFLLDN TSMRSQSPNN SFYQLDCGNS 420
  421 SIYARPKPPP YKGGTLGRNG VDI

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	293	0.99
Transmembrane Helix	294	317	0.84
Cytoplasmic	318	443	0.91