YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Mcr-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWHLLRALL VVAAVLDALQ PAVGQNDNYY NPNQNQQNPQ QPLLPNQQWG NNPQTNQYSN  60
   61 NNQNFGQTNP SDRPPYRTDS GSYNDIAGQD DYNKRVGGGY QDNEEPSLTR GKSSYNIKAT 120
  121 FLESLHSREP TYFIVASRMV RPGLIYQVSV SILQAQYPIT VHASIACDGV QISGDSKDVK 180
  181 EGIPETLLMR IPPTSVTGSY KLRVEGFYQN VFGGLAFLNE TRLDFSQRSM TIFVQTDKPL 240
  241 YMQGETVRFR TIPITTELKG FDNPVDVYML DPNRHILKRW LSRQSNLGSV SLEYKLSDQP 300
  301 TFGEWTIRVI AQGQQEESHF TVEEYYQTRF EVNVTMPAYF FTTDPFIYGR VMANFTSGLP 360
  361 VRGNLTIKAT IRPIGYFSNQ VLNEKYRLGR SPLEQTNLYN ERWRYNNPNQ NPQVQYNVPG 420
  421 QLPQDGADLS QDILYRNQYV VERHYQFDEE WPFWVRKPEY QDSSYEAWSG TYRKTLPYLR 480
  481 YFNGTFDFKW PLRELELLVP NLANSEVLIT ATVGEKFYDE IISGYSVARV YNSSLRVVFL 540
  541 GDSPQVFKPA MPFTTYLAVE YHDGSPIDPN LLRQGLMEVS GFVESRNGGR RDWPAQRLPM 600
  601 SQQSDGIWEV KIDIRNDLNL DDRPQARDFL NGVQNMRLQA NFVDPRGERI QTELLLVSHY 660
  661 SPRNQHIKVT TSTEKPVVGE YIIFHIRTNF YLEEFNYLIM SKGVILVNDR ETITEGIKTI 720
  721 AVVLSSEMAP VATIVVWKIN QQGQVVADSL TFPVNGISRN NFTVYINNRK ARTGEKVEVA 780
  781 IFGEPGSYVG LSGIDSAFYT MQAGNELTYA KIITKMSNFD EQTNGTYKHI WYSHEGNPDE 840
  841 LVYFPASSFG VDANRTFEYS GLIVFTDGYV PRRQDTCNRT LGFGECLSGR CYRLEKQCDG 900
  901 LFDCDDGTDE INCHARNDTE LLNYRKYRFN RVLRHYENVW LWKDVNIGPH GRYIFNVEVP 960
  961 DRPAYWMVSA FSVSPSKGFG MMNKALEYVG VQPFFINVEM PEACRQGEQV GIRVTVFNYM1020
 1021 ITPIEAIVVL HDSPDYKFVH VEEDGIVRSY NPRTSFGEHQ FFIYLEAQGT TVVYVPVVPQ1080
 1081 RLGNVDVTLH VATLLGTDTI TRTLHVESDG LPQYRHQSVL LDLSNRAYVL EYMHVNVTQT1140
 1141 PEIPYQVDRY FVYGSNKARI SVVGDVVGPI FPTMPVNASS LLSLPMESGE QNAFSFAANL1200
 1201 YTIMYMRLIN QRNKTLEKNA FYHMNIGYQR QLSFMRPDGS FSLFRSDWNN SDSSVWLTSY1260
 1261 CLRVFQEASF YEWENFIWID ATIIEKNMRW LLQHQTPQGS FFEVTWLPDR KMNRTNFDKN1320
 1321 ITLTSHVLIT LATVKDISGT LGSRVALATQ RALAYIERNM DFLRHQAQPF DVAITAYALQ1380
 1381 LCNSPIAEEV FAILRRQART IGDFMYWGNQ EIPQPPRKLE NQKWFSLPRL PYEYDSLNIE1440
 1441 TTAYALLVYV ARREFFVDPI VRWLNSQRLN DGGWASTQDT SAALKALVEY TVRSRLREVS1500
 1501 SLTVEIEASS QGGKTQTLYI DDTNLAKLQS IEIPDAWGTI KVQAKGAGYA ILQMHVQYNV1560
 1561 DIEKFQTKPP VPAFGLHTKA IFHGRNQSHI SYVACQNWIN QNESERSGMA VLDVAIPTGY1620
 1621 WIQQQKLDTY VLSNRVRNLR RARYLERKIV FYFDYLDHED ICVNFTIERW YPVANMSRYL1680
 1681 PVRIYDYYAP ERFNESIFDA LPTYLLNICE VCGSSQCPYC SIYNMGWRAS MSMSLLFFSV1740
 1741 FIYLLRSRTH LVLNMMQLLT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle