YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ntl-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	31	0.87
Non-Cytoplasmic	32	33	0.54
Transmembrane Helix	34	53	0.28
Cytoplasmic	54	56	0.31
Transmembrane Helix	57	80	0.72
Non-Cytoplasmic	81	144	0.54
Transmembrane Helix	145	165	0.86
Cytoplasmic	166	173	0.48
Transmembrane Helix	174	196	0.83
Non-Cytoplasmic	197	218	0.53
Transmembrane Helix	219	244	0.77
Cytoplasmic	245	255	0.48
Transmembrane Helix	256	280	0.88
Non-Cytoplasmic	281	314	0.60
Transmembrane Helix	315	336	0.89
Cytoplasmic	337	356	0.89
Transmembrane Helix	357	380	0.91
Non-Cytoplasmic	381	388	0.78
Transmembrane Helix	389	410	0.96
Cytoplasmic	411	430	0.93
Transmembrane Helix	431	452	0.95
Non-Cytoplasmic	453	464	0.84
Transmembrane Helix	465	487	0.91
Cytoplasmic	488	542	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDSACSCF ITAFLIPYLL MVILAGIPLF YMEILIGQFS STGCTGMFRM TPLLKGTGIA  60
   61 QVVVNAYCVC YYSVIISYPI RMIFYCFFKK VPWEDCSNSW NTDDCVTASD MGKQNSSDVF 120
  121 KTSADEFFHL EVLRISTDIS DLGGMVWEQL TALIITWIII YFCLMRGIKS VGKVVYFTVP 180
  181 FPYLLLFILL IRGATLPGAW KGIKFYLYPE WHRLLDLKVW ADAAVQMFFG IGPGWGGIVN 240
  241 MASFSSFRNN AKCDSVLIVS INVFTSLLAG FVVFSVLGFL SEKSGIPVES VATGGAGLAF 300
  301 VTYPEAIALL PVPQLWALMF FFMLFLLGID SVFVQLEAIM SSILDEWYWV RSHKCKLTLI 360
  361 SCLIFLGLSS IMCTNGGMFI LQLFDWYSSA IAVIVICLVE IIMVAWIYGI KNFMLDVEFM 420
  421 LGKRPTLYWR IVWQVVTPVI IIFILITSIV FIRTITYNNI PYPQWAIIIG WASCFTSVMW 480
  481 IPLYIFYIMI RKRATLCDSL KKRLKPLDWT PADPQDRAEY EAFRRQRRMP GFMSDTDMES 540
  541 SK