YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Eaat2-PA, Eaat2-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	56	0.90
Non-Cytoplasmic	57	75	0.84
Transmembrane Helix	76	98	0.88
Cytoplasmic	99	107	0.84
Transmembrane Helix	108	130	0.90
Non-Cytoplasmic	131	226	0.87
Transmembrane Helix	227	247	0.89
Cytoplasmic	248	262	0.67
Transmembrane Helix	263	288	0.76
Non-Cytoplasmic	289	299	0.71
Transmembrane Helix	300	324	0.85
Cytoplasmic	325	333	0.71
Transmembrane Helix	334	355	0.88
Non-Cytoplasmic	356	388	0.77
Transmembrane Helix	389	415	0.77
Cytoplasmic	416	423	0.57
Transmembrane Helix	424	446	0.78
Non-Cytoplasmic	447	563	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPPTSTELP PKTTECSDAP VELTGYRRWL SENLMLLVTL SGVLLGVILG LSLRPLNLHG  60
   61 DSIMLISYPG ELFMRVLKLM ILPLVISSLI AGSASLNAKM NGKIALRTLV YFASTSFFNA 120
  121 ALGIALVLLI HPGNPDLHNA DDRSTDRRAV NLLDSLLDLG RNVFPDNLFQ ASIQQAHTVY 180
  181 LPKPSILHVF NETMNDTLAS GSEAQRLSED LTEDVVLVRD IQYRSGTNTL GIVFFCLVFG 240
  241 TFLGTIGQKG QVVVDFFAAI FEVIMKMVTC VMWLTPVGIS SVIAGKILSV GDLGLVMSQL 300
  301 MWFIVTVAIG VFIYQFVVMQ AIYFVVVRRN PFKFYAGLIQ AMLTAFATAS TAAALPITFR 360
  361 CMNEKLKVDP RITRFVLPIG CNINMDGTAL YIAVASIFIA QMSGMVLGFG ELLTVLLTST 420
  421 AASMSSASVP SAALVLLLVV LTAIDAPVQD VTLLFAVDWF VDRIRTTNNM LGDCYTAAVV 480
  481 EELSRKELMA LDAASVNYQD MPAGTPNGHG HGHGHHDGGL LEGQTELETS SKCVMTMTDS 540
  541 VVVDISAVMN NVNLQQEHCN RRV