YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220947006
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEVIGTVK EVLKGIIENV NAPKNESAPG EKKPSTPEGM AVAYSSLVVM AMLPIIFGSI  60
   61 RSVKLHKLKK STGEKADTMT KKDAMYFPLI ASAALFGLYL FFKIFQKVHI NYLLTGYFFV 120
  121 LGVIALAHLL SPVINSLMPA AVPKVPFHIL FTKGEGKHKE DIVNYKFSTH DIVCLVISSA 180
  181 IGVWYLLKKH WIANNLFGLA FAINGVEMLH LNNFVTGVIL LSGLFFYDIF WVFGTNVMVT 240
  241 VAKSFEAPIK LVFPQDLIEN GLNASNFAML GLGDIVIPGI FIALLLRFDD SKKRKTRIYF 300
  301 YSTLIAYFLG LLATIFVMHV FKHAQPALLY LVPACMGTPL LVALIRGELK VLFAYEDHPE 360
  361 EKPEKKEKKE KDEGVSSSGS KKKESKKGK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.54
Transmembrane Helix	40	63	0.85
Non-Cytoplasmic	64	83	0.54
Transmembrane Helix	84	105	0.87
Cytoplasmic	106	111	0.46
Transmembrane Helix	112	132	0.89
Non-Cytoplasmic	133	166	0.55
Transmembrane Helix	167	187	0.71
Cytoplasmic	188	207	0.70
Transmembrane Helix	208	231	0.82
Non-Cytoplasmic	232	266	0.89
Transmembrane Helix	267	288	0.91
Cytoplasmic	289	297	0.95
Transmembrane Helix	298	320	0.92
Non-Cytoplasmic	321	326	0.81
Transmembrane Helix	327	345	0.95
Cytoplasmic	346	389	0.96