YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24580523, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.72
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	101	0.68
Transmembrane Helix	102	122	0.90
Cytoplasmic	123	128	0.54
Transmembrane Helix	129	151	0.83
Non-Cytoplasmic	152	160	0.57
Transmembrane Helix	161	183	0.75
Cytoplasmic	184	191	0.47
Transmembrane Helix	192	219	0.84
Non-Cytoplasmic	220	229	0.47
Transmembrane Helix	230	251	0.86
Cytoplasmic	252	259	0.40
Transmembrane Helix	260	280	0.49
Non-Cytoplasmic	281	301	0.59
Transmembrane Helix	302	324	0.91
Cytoplasmic	325	331	0.61
Transmembrane Helix	332	351	0.64
Non-Cytoplasmic	352	353	0.62
Transmembrane Helix	354	375	0.85
Cytoplasmic	376	390	0.84
Transmembrane Helix	391	411	0.93
Non-Cytoplasmic	412	418	0.85
Transmembrane Helix	419	442	0.91
Cytoplasmic	443	455	0.90
Transmembrane Helix	456	475	0.93
Non-Cytoplasmic	476	485	0.83
Transmembrane Helix	486	509	0.92
Cytoplasmic	510	647	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVWVAYSAA ALLLLVHAGP ESISGQEVPQ SKTSSNTTTT DNSSSIHTVS DVFVNSPLGN  60
   61 VTPSISASGN ASTTKRGNAS TLVTDPPLID SHAVEQEHNS SLSLFFVICV IMLGILLIHS 120
  121 MLQTGFQYLP ESIVVVFLGA FIGLSLNVMS GQNGSWKREE VFSPMGFFLV LLPPIIFESG 180
  181 YNLHKGNFFQ NIGSILVFAI FGTTISALVI GAGIYLLGLG EVAFRFSESF AFGSLISAVD 240
  241 PVATVAIFHA LDVDPILNML VFGESILNDA ISIVLTASIT QSANVNAEAS TGEAMFSALK 300
  301 TFCAMFFASA GIGVIFALIS ALLLKHIDLR KHPSLEFAMM LMFTYAPYVL AEGIHLSGIM 360
  361 AILFCGIVMS HYTHFNLSTV TQITMQQTMR TLAFIAETCV FAYLGLAIFS FKHQVELSFV 420
  421 IWAIVLCLIG RACNIFPLAF LVNKFREHKI NNKMQFIMWF SGLRGAISYA LSLHLNLDSQ 480
  481 EKRHVIITTT LIIVLFTTLV LGGSTMPLLK YLKPGKKRRA RGSGRNAAEE GGRRNGSGRK 540
  541 RSKSISLSKT REWGQAIDSE HLSELTEEED VTFTQARDRF GRMDRKYFIP FFTRRFNSQE 600
  601 LHECKSQMAD LTNKWYQAIR VSPLDSDESD EEIGLAASTS QIHLTRS