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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30017417, gi|...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAGTLPWV QGIICNANNP CFRYPTPGEA PGVVGNFNKS IVSRLFSDAQ RILLYSQKDT  60
   61 SIRDMHKVLR TLQQIKHPNS NLKLQDFLVD NETFSGFLQH SLSLPRSAVD NLLQADVSLQ 120
  121 KVFLQGYQLH LASLCNGSKL EEIIRPEDLK VSALCSLPRE KLDAPERELR SNMDILKPVM 180
  181 TKLNSTSLLP TQHLAEATTT LLDSLGGLAQ ELFSTKSWSD MRQEVMFLTN VNNSGSSTQI 240
  241 YQAVSRIVCG HPEGGGLKIK SLNWYEDNNY KALFGGNGTE EDTDTFYDNS TTPYCNDLMK 300
  301 NLESSPLSRI IWKALKPLLI GKILYTPDTP ATRQVMAEVN KTFQELALFP DLEGMWEELS 360
  361 PQIWTFMESS QEMDLVRPML DLRGNDQFWE RKLDGLYWTA QDIMAFLAKN PEDVQSPNGS 420
  421 VYTWREAFNE TNQAIQTISR FMECVNLNKL EPIPTEVTLI NKSMDLLDAR KFSAGIDFTG 480
  481 ITPDSVELPH HVKDKIRMDI DNVERTNKIK DGYWDPGPRA DPFEDMRYVW GGFAYLQDVV 540
  541 EQAIIRVLTG TEKKTGVYVQ QMPYPCYVDD IFLRVMSRSM PLFMTLAWIY SVAVIIKSIV 600
  601 YEKEARLKET MRIMGLDNGI LWFSWFISSL IPLLVSAGLL VIILKLGDLL PYSDPSVVFV 660
  661 FLSVFAVVTI LQCFLISTLF SRXNLAAACG GIIYFTLYLP YVLCVAWQDY VGFSIKIFAS 720
  721 LLSPVAFGFG CEYFALFEEQ GIGVQWDNLF KSPVEEDGFN LTTSVSMMLF DTFIYGVMTW 780
  781 YIEAVFPGQY GIPRPWYFPC TKSYWFGEEI DEKSHPGSSQ KGASEICMEE EPTHLKLGVS 840
  841 IQNLVKVYRD GMKVAVDGLA LNFYEGQITS FLGHNGAGKT TTMSILTGLF PPTSGTAYIL 900
  901 GKDIRSEMNS IRQNLGVCPQ HNVLFDMLTV EEHIWFYARL KGLSEKHVKA EMEQMALDVG 960
  961 LPPSKLKSKT SQLSGGMQRK LSVALAFVGG SKVVILDEPT AGVDPYSRRG IWELLLKYRQ1020
 1021 GRTIILSTHH MDEADILGDR IAIISHGKLC CVGSSLFLKN QLGTGYYLTL VKKDVESSLS1080
 1081 SCRNSSSTVS CLKKEDSVSQ SSSDAGLGSD HESDTLTIDV SAISNLIRKH VSEARLVEDI1140
 1141 GHELTYVLPY EAAKEGAFVE LFHEIDDRLS DLGISSYGIS ETTLEEIFLK VAEESGVDAE1200
 1201 TSDGTLPARR NRRAFGDKQS CLHPFTEDDA VDPNDSDLDP ESRETDLLSG MDGKGSYQLK1260
 1261 GWKLTQQQFV ALLWKRLLIA RRSRKGFFAQ IVLPAVFVCI ALVFSLIVPP FGKYPNLELQ1320
 1321 PWMYNEQYTF VSNDAPEDMG TQELLNALTK DPGFGTRCME GNPIPNTPCL VGEEDWTTGP1380
 1381 VPQTLMDLFQ NGNWTMKNPS PSCQCSSDKI KKMLPVCPPG AGGLPPPQRK QKTADILQNL1440
 1441 TGRNNSDYLV KTYVQIIAKS LKNKVWVNEF RYGGFSLGVS DSQALPPSQE VNNAIKQMKK1500
 1501 LLKLTKDSSA DRFLSSLGRF MTGLDTKNNV KVWFNNKGWH AISSFLNVIN NAILRANLQK1560
 1561 GENPSQYGIT AFNHPLNLTK QQLSEVALMT TSVDVLVSIC VIFAMSFVPA SFVVFLIQER1620
 1621 VSKAKHLQFI CGVKPVIYWL SNFVWDMCNY VVPATLVVII FICFQQKSYV SSTNLPVLAL1680
 1681 LLLLYGWSIT PLMYPASFVF KIPSTAYVVL TSVNLFIGIN GSVATFVLEL FTNNKFNDIN1740
 1741 DILKSVFLIF PHFCLGRGLI DMVKNQAMAD ALERFGENRF VSPLSWDLVG RNLFAMAVEG1800
 1801 VVFFLVTVLI QYRFFIRPRP VKARLPPLND EDEDVRRERQ RILEGGGQND ILEIKELTKI1860
 1861 YRRKRKPAVD RICVGIPPGE CFGLLGVNGA GKTSTFKMLT GDTAVTRGDA LLNKNSILSN1920
 1921 IHEVHQNMGY CPQFDAITEL LTGREHLEFF ALLRGVPEKE VGKVGEWAIR KLGLVKYGEK1980
 1981 YASNYSGGNK RKLSTAIALI GGPPVVFLDE PTTGMDPKAR RFLWNCALSI IKEGRSVVLT2040
 2041 SHSMEECEAL CTRMAIMVNG RFRCLGSVQH LKNRFGDGYT IVVRIAGSNP DLKPVQEFFG2100
 2101 LAFPGSVLKE KHRNMLQYQL PSSLSSLARI FSILSQSKKR LHIEDYSVSQ TTLDQVFVNF2160
 2161 AKDQSDDDHL KDLSLHKNQT VVDVAVLTSF LQDEKVKESY V

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