YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28301533
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVYGFPAF TSATELLLAV TTFCLGFWVV RVTRTWVPKG LKSPPGPWGL PFIGHVLTLG  60
   61 KNPHLSLTKL SQQYGDVLQI RIGSTPVVVL SGLNTIKQAL VKQGDDFKGR PDLYSFTLIA 120
  121 NGQSMTFNPD SGPLWAARRR LAQNALKSFS IASDPTLASS CYLEEHVSKE AEYLISKFQK 180
  181 LMAEVGLFDP FKYLVVSVAN VICAICFGRR YDHDDQDLLS IVNLSNEFGE VTGSGYPADF 240
  241 IPIPRYLPNS SLDAFKDLNK KFYSFSKKLI KEHYRTFEKG HIRDITDSLI EHCQDRRLDE 300
  301 NANVQLSDDK VITIVFDLFG AGFDTITTAI SWSLSYLVTN PRIQRKIQEE LDTVIGRDRQ 360
  361 PRLSDRPQLP YLEAFILETF RHSSFVPFTI PHSTIRDTSL NGFYIPKGHC VFVNQWQVNH 420
  421 DQELWGDPNE FRPERFLTSS GTLDKHLSEK VLSEKVILFG LGKRKCIGET IGQLEVFLFL 480
  481 AILLQQMEFN VSPGEKVDST PAYGLTLKHA RCEHFQVQMR SSGPQHLQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.61
Transmembrane Helix	9	30	0.64
Cytoplasmic	31	44	0.49
Transmembrane Helix	45	59	0.32
Non-Cytoplasmic	60	529	0.78