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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TBX3_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG AAALSLPGAL  60
   61 AKPIMDQLVG AAETGIPFSS LGPQAHLRPL KTMEPEEDVE DDPKVHLEAK ELWDQFHKRG 120
  121 TEMVITKSGR RMFPPFKVRC SGLDKKAKYI LLMDIIAADD CRYKFHNSRW MVAGKADPEM 180
  181 PKRMYIHPDS PATGEQWMSK VVTFHKLKLT NNISDKHGFT LAFPSDHATW QGNYSFGTQT 240
  241 ILNSMHKYQP RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA 300
  301 KGFRDTGNGR REKRKQLTLQ SMRVFDERHK KETGTSDESS SEQAAFNCFA QASSPAVSTV 360
  361 GTSNLKDLCP SEAESDAEAE SKEEHGPEAC DTAKISTTTA EEPGRDKGSP ATRAQLFPAE 420
  421 PSRARDTARL DKASPDSRHS PATISSSTRV PGADEHRSPG REGPVSAKVD EARALPAKDA 480
  481 FAPLSVQTDA TAHLTQGPLP GLGFAPGLAG QQFFNGHPLF LHPGQFAMGG AFSSMAAGMG 540
  541 PLLATVSGAS TGVSGLDSTA MASAAAAQGL SGASAATLPF HLQQHVLASQ GLAMSPFGSL 600
  601 FPYPYTYMAA AAAASSAAAS SSVHRHPFLN LNSMRPRLRY SPYSIPVPVP DSSSLLATAL 660
  661 PSMASAAGPL DGKSAVLAAS PASVAVDSGS ELNSRSSTLS SGSVSLSPKL CSEKEAATSE 720
  721 LQSIQRLVSG LEAKPDRSCS GSP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle