YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MBOA2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSTTGST LLQPLSNAVQ LPIDQVNFVV CQLFALLAAV WFRTYLHSSK TSSFIRHVVA  60
   61 TLLGLYLAFF CFGWYALHFL VQSGISYCIM IIAGVESMHQ CCFVFALGYL SVCQITRVYI 120
  121 FDYGQYSADF SGPMMIITQK ITSLAYEIHD GMFRKDEELT PSQRGLAVRR MPSLLEYVSY 180
  181 TCNFMGILAG PLCSYKDYIA FIEGRASHMA QSGENGKEEQ HGKAEPSPNA AVTEKLLVCG 240
  241 LSLLFHLTIS SMLPVEYNID EHFQATASWP TKATYLYVSL LAARPKYYFA WTLADAINNA 300
  301 AGFGFRGYDK NGVARWDLIS NLRIQQIEMS TSFKMFLDNW NIQTALWLKR VCYERATFSP 360
  361 TVQTFFLSAI WHGVYPGYYL TFLTGVLMTL AARAVRNNFR HYFVEPPQLK LFYDIITWAA 420
  421 TQITISYTVV PFVLLSINPS FTFYRSWYYC LHICSILVLL LLPVKKSPRK KNTEENAQPS 480
  481 WAKKFDEREN SLGQNSFSMM NNVCNQNQDT GSRHSALTQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	45	0.79
Cytoplasmic	46	53	0.86
Transmembrane Helix	54	77	0.88
Non-Cytoplasmic	78	86	0.71
Transmembrane Helix	87	110	0.74
Cytoplasmic	111	287	0.67
Transmembrane Helix	288	303	0.22
Non-Cytoplasmic	304	374	0.60
Transmembrane Helix	375	395	0.86
Cytoplasmic	396	414	0.84
Transmembrane Helix	415	435	0.91
Non-Cytoplasmic	436	444	0.77
Transmembrane Helix	445	464	0.92
Cytoplasmic	465	519	0.98