YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELTAVLLLL GLCSAGTVLG SEHETRLVAK LFKDYSSVVR PVGDHREIVQ VTVGLQLIQL  60
   61 INVDEVNQIV TTNVRLKQQW VDYNLKWNPD DYGGVKKIHI PSEKIWRPDV VLYNNADGDF 120
  121 AIVKFTKVLL DYTGHITWTP PAIFKSYCEI IVTHFPFDEQ NCSMKLGTWT YDGSVVAINP 180
  181 ESDQPDLSNF MESGEWVIKE ARGWKHWVFY SCCPNTPYLD ITYHFVMQRL PLYFIVNVII 240
  241 PCLLFSFLTS LVFYLPTDSG EKMTLSISVL LSLTVFLLVI VELIPSTSSA VPLIGKYMLF 300
  301 TMVFVIASII ITVIVINTHH RSPSTHIMPE WVRKVFIDTI PNIMFFSTMK RPSRDKQEKR 360
  361 IFTEDIDISD ISGKPGPPPM GFHSPLIKHP EVKSAIEGVK YIAETMKSDQ ESNNASEEWK 420
  421 YVAMVMDHIL LGVFMLVCLI GTLAVFAGRL IELHQQG

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	232	0.99
Transmembrane Helix	233	255	0.94
Cytoplasmic	256	263	0.90
Transmembrane Helix	264	285	0.91
Non-Cytoplasmic	286	296	0.77
Transmembrane Helix	297	318	0.92
Cytoplasmic	319	428	0.97
Transmembrane Helix	429	451	0.90
Non-Cytoplasmic	452	457	0.95