YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62638386, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	64	0.83
Non-Cytoplasmic	65	84	0.87
Transmembrane Helix	85	105	0.93
Cytoplasmic	106	111	0.91
Transmembrane Helix	112	134	0.89
Non-Cytoplasmic	135	141	0.64
Transmembrane Helix	142	160	0.96
Cytoplasmic	161	170	0.80
Transmembrane Helix	171	193	0.87
Non-Cytoplasmic	194	201	0.81
Transmembrane Helix	202	221	0.96
Cytoplasmic	222	282	0.96
Transmembrane Helix	283	302	0.89
Non-Cytoplasmic	303	318	0.84
Transmembrane Helix	319	341	0.76
Cytoplasmic	342	348	0.72
Transmembrane Helix	349	368	0.93
Non-Cytoplasmic	369	468	0.84
Transmembrane Helix	469	491	0.88
Cytoplasmic	492	502	0.77
Transmembrane Helix	503	525	0.80
Non-Cytoplasmic	526	528	0.56
Transmembrane Helix	529	553	0.82
Cytoplasmic	554	621	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPVENTEGP NLLNQKGREA ETDGSCGASG GRHPACAGGP GMFTFLTSVT AAISGLLVGY  60
   61 ELGLISGALL QIRTLLALTC HEQEMVVSSL LIGAFLASLT GGVLIDRYGR RLTIILSSCL 120
  121 LGLGSLVLIL SLSYTLLITG RVAIGVSISL SSIATCVYIA EIAPQHRRGL LVSLNELMIV 180
  181 TGILFAYISN YAFANISNGW KYMFGLVIPL GVLQAIAMYF LPPSPRFLVM KGQEEAAGKV 240
  241 LRKLRVISDT AEELTLIKSS LKDEYQYSFW DLFRSKDNMR TRILIGLTLV FFVQTTGQPN 300
  301 ILFYASTVLK SVGFQSNEAA SLASTGVGVV KVVSTIPATL LVDHVGSKTF LCIGSSVMAA 360
  361 SLLTMGIVNL NINMNFTNIC RSHSPLNQSL EELVFYATGN LSVSNSSLGE HLKRVTPYSK 420
  421 GLFIPLGNGM EPKGEMAFTS LPNAGLSRTD RQGVTDPAVV PAVYKWLSLA SLLVYVAAFS 480
  481 IGLGPMPWLV LSEIFPGGIR GRAMALTSSM NWGINLLISL TFLTVTDLIG LSWVCFIYTV 540
  541 MSLTSLAFVV LFIPETKGCS LEQISMELSK ANYVKNNICF MSHHQEELVP TQLQKTKPQE 600
  601 QLPECKKLCG RGQSQRPSPE T