YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGTRA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNSSAEDG IKRIQDDCPK AGRHSYIFVM IPTLYSIIFV VGIFGNSLVV IVIYFYMKLK  60
   61 TVASVFLLNL ALADLCFLLT LPLWAVYTAM EYRWPFGNHL CKIASASVSF NLYASVFLLT 120
  121 CLSIDRYLAI VHPMKSRLRR TMLVAKVTCI IIWLMAGLAS LPAVIHRNVY FIENTNITVC 180
  181 AFHYESRNST LPIGLGLTKN ILGFLFPFLI ILTSYTLIWK ALKKAYEIQK NKPRNDDIFR 240
  241 IIMAIVLFFF FSWVPHQIFT FLDVLIQLGV IHDCKISDIV DTAMPITICI AYFNNCLNPL 300
  301 FYGFLGKKFK KYFLQLLKYI PPKAKSHSSL STKMSTLSYR PSDNMSSSAK KPASCFEVE

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.96
Transmembrane Helix	34	56	0.94
Cytoplasmic	57	64	0.87
Transmembrane Helix	65	86	0.94
Non-Cytoplasmic	87	102	0.87
Transmembrane Helix	103	124	0.84
Cytoplasmic	125	142	0.84
Transmembrane Helix	143	165	0.92
Non-Cytoplasmic	166	200	0.93
Transmembrane Helix	201	219	0.96
Cytoplasmic	220	237	0.93
Transmembrane Helix	238	259	0.91
Non-Cytoplasmic	260	285	0.90
Transmembrane Helix	286	305	0.65
Cytoplasmic	306	359	0.69