YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC6A6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	69	0.89
Non-Cytoplasmic	70	78	0.86
Transmembrane Helix	79	101	0.90
Cytoplasmic	102	118	0.87
Transmembrane Helix	119	141	0.89
Non-Cytoplasmic	142	215	0.95
Transmembrane Helix	216	236	0.93
Cytoplasmic	237	244	0.84
Transmembrane Helix	245	267	0.91
Non-Cytoplasmic	268	297	0.89
Transmembrane Helix	298	316	0.93
Cytoplasmic	317	327	0.84
Transmembrane Helix	328	350	0.91
Non-Cytoplasmic	351	377	0.92
Transmembrane Helix	378	400	0.82
Cytoplasmic	401	429	0.91
Transmembrane Helix	430	452	0.88
Non-Cytoplasmic	453	460	0.85
Transmembrane Helix	461	485	0.90
Cytoplasmic	486	505	0.93
Transmembrane Helix	506	525	0.97
Non-Cytoplasmic	526	542	0.89
Transmembrane Helix	543	566	0.92
Cytoplasmic	567	621	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKEKLQCL KDFHKDILKP SPGKSPGTRP EDEADGKPPQ REKWSSKIDF VLSVAGGFVG  60
   61 LGNVWRFPYL CYKNGGGAFL IPYFIFLFGS GLPVFFLEVI IGQYTSEGGI TCWEKICPLF 120
  121 SGIGYASIVI VSLLNVYYIV ILAWATYYLF QSFQKDLPWA HCNHSWNTPQ CMEDTLRRNE 180
  181 SHWVSLSAAN FTSPVIEFWE RNVLSLSSGI DHPGSLKWDL ALCLLLVWLV CFFCIWKGVR 240
  241 STGKVVYFTA TFPFAMLLVL LVRGLTLPGA GEGIKFYLYP NISRLEDPQV WIDAGTQIFF 300
  301 SYAICLGAMT SLGSYNKYKY NSYRDCMLLG CLNSGTSFVS GFAIFSILGF MAQEQGVDIA 360
  361 DVAESGPGLA FIAYPKAVTM MPLPTFWSIL FFIMLLLLGL DSQFVEVEGQ ITSLVDLYPS 420
  421 FLRKGYRREI FIAIVCSISY LLGLTMVTEG GMYVFQLFDY YAASGVCLLW VAFFECFVIA 480
  481 WIYGGDNLYD GIEDMIGYRP GPWMKYSWAV ITPALCVGCF IFSLVKYVPL TYNKVYRYPD 540
  541 WAIGLGWGLA LSSMVCIPLV IVILLCRTEG PLRVRIKYLI TPREPNRWAV EREGATPFHS 600
  601 RATLMNGALM KPSHVIVETM M