YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOXA2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAVKMEGH EPSDWSSYYA EPEGYSSVSN MNASLGMNGM NTYMSMSAAA MGSGSGNMSA  60
   61 GSMNMSSYVG AGMSPSLAGM SPGAGAMAGM SGSAGAAGVA GMGPHLSPSL SPLGGQAAGA 120
  121 MGGLAPYANM NSMSPMYGQA GLSRARDPKT YRRSYTHAKP PYSYISLITM AIQQSPNKML 180
  181 TLSEIYQWIM DLFPFYRQNQ QRWQNSIRHS LSFNDFLKVP RAPDKPGKGS FWTLHPDSGN 240
  241 MFENGCYLRR QKRFKCENEL ALKEAAGAGS GGGKKTAPGT QASQVQLGEA AGSASETPAG 300
  301 TESPHSSASP CQEHKRGGLS ELKGTPASAL SPPEPAPSPG QQQQAAAHLL GPPHHPGLPP 360
  361 EAHLKPEHHY AFNHPFSINN LMSSEQQHHH SHHHHQPHKM DLKTYEQVMH YPGGYGSPMP 420
  421 GSLAMGPVTN KAGLDASPLA ADTSYYQGVY SRPIMNSS

Type	Start	End	Confidence
Cytoplasmic	1	40	0.59
Transmembrane Helix	41	63	0.70
Non-Cytoplasmic	64	77	0.42
Transmembrane Helix	78	103	0.78
Cytoplasmic	104	109	0.38
Transmembrane Helix	110	130	0.55
Non-Cytoplasmic	131	458	0.65