YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA3R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANNTTTSA LWLQITYITM EAAIGLCAVV GNMLVIWVVK LNRTLRTTTF YFIVSLALAD  60
   61 IAVGVLVIPL AIAVSLEVQM HFYACLFMSC VLLVFTHASI MSLLAIAVDR YLRVKLTVRY 120
  121 RTVTTQRRIW LFLGLCWLVS FLVGLTPMFG WNRKVTLELS QNSSTLSCHF RSVVGLDYMV 180
  181 FFSFITWILI PLVVMCIIYL DIFYIIRNKL SQNLTGFRET RAFYGREFKT AKSLFLVLFL 240
  241 FALCWLPLSI INFVSYFNVK IPEIAMCLGI LLSHANSMMN PIVYACKIKK FKETYFVILR 300
  301 ACRLCQTSDS LDSNLEQTTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	39	0.91
Cytoplasmic	40	49	0.86
Transmembrane Helix	50	73	0.94
Non-Cytoplasmic	74	82	0.81
Transmembrane Helix	83	108	0.91
Cytoplasmic	109	128	0.95
Transmembrane Helix	129	150	0.94
Non-Cytoplasmic	151	182	0.93
Transmembrane Helix	183	203	0.93
Cytoplasmic	204	233	0.89
Transmembrane Helix	234	254	0.91
Non-Cytoplasmic	255	263	0.72
Transmembrane Helix	264	284	0.81
Cytoplasmic	285	320	0.87