YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2266753
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRLARGCW SAFWDYETPK VIVVRNRRLG FVHRMVQLLI LLYFVWVASG AGTALSHRYV  60
   61 FIVQKSYQDS ETGPESSIIT KVKGITMSED KVWDVEEYVK PPEGGSVVSI ITRIEVTPSQ 120
  121 TLGTCPESMR VHSSTCHSDD DCIAGQLDMQ GNGIRTGHCV PYYHGDSRTC EVSAWCPVED 180
  181 GTSDNHFLGK MAPNFTILIK NSIHYPKFKF SKGNIASQKS DYLKHCTFDQ DSDPYCPIFR 240
  241 LGFIVEKAGE NFTELAHKGG VIGVIINWNC DLDLSESECN PKYSFRRLDP KYDPASSGYN 300
  301 FRFAKYYKIN GTTTTRTLIK AYGIRIDVIV HGQAGKFSLI PTIINLATAL TSIGVGSFLC 360
  361 DWILLTFMNK NKLYSHKKFD KVRTPKHPSS RWPVTLALVL GQIPPPPSHY SQDQPPSPPS 420
  421 GEGPTLGEGA ELPLAVQSPR PCSISALTEQ VVDTLGQHMG QRPPVPEPSQ QDSTSTDPKG 480
  481 LAQL

Type	Start	End	Confidence
Cytoplasmic	1	34	0.92
Transmembrane Helix	35	55	0.88
Non-Cytoplasmic	56	345	0.98
Transmembrane Helix	346	367	0.66
Cytoplasmic	368	484	0.56