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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AKAP1_RAT
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIQFRSLFP LALPGMLALL GWWWFFSRKK DRLSSNGKQV GTLKVGPAIE DRLPTEEACP  60
   61 GVLSVTPSVT QPPGKEEQRS MDRPLSDPPA LPRTRQVRRR SESSGNLPSI VDTRLQAGQC 120
  121 SDENSKVVLS LMGDEAKSIP LGRPLFPKDL SFPYEAVEGC KQESALGRTP GRGWLSQCAA 180
  181 SGENARETGG AEGTGDAVLG ESVLEEGLLP QECVSEVEKS EFPILAPGGG GGEKVRSGPP 240
  241 QVDELLKKEE YIVGKLPSSF VGPVHSELVK DEGALVPQVK GSQDRSLARE LDKDKTLPEK 300
  301 DQIEQTAFQI ISQVILEATE EIRATTVGKT VAQVHPTPGT QPQGQEESCV PASQETSLGQ 360
  361 EIPDPASTRT GATASPSAGA PPPKTYVSCL SSPLSGPTKD QKPKNSAHHI SLAPCPPPVT 420
  421 PQRQSLDGAS NPRGDDTFVT CTSNNSQSVL SVTSLGLCSD PVSTSRLEDS CTETISSSGD 480
  481 KAVTPPLPDS TEPFSNGVLK EELSDLGTED GWTMDTEADH SGGSDGNSMD SVDSCCGLTK 540
  541 PDSPQTVQAG SNPKKVDLII WEIEVPKHLV GRLIGKQGRY VSFLKQTSGA KIYISTLPYT 600
  601 QNIQICHIEG SQHHVDKALN LIGKKFKELN LTNIYAPPLP SLALPSLPMT SWLMLPDGIT 660
  661 VEVIVVNQVN AGHLFVQQHT HPTFHALRSL DQQMYLCYSQ PGIPTLPTPV EITVICAAPG 720
  721 ADGAWWRAQV VASYEETNEV EIRYVDYGGY KRVKVDVLRQ IRSDFVTLPF QGAEVLLDSV 780
  781 VPLSDDDHFS PEADAAMSEM TGNTALLAQV TSYSATGLPL IQLWSVVGDE VVLINRSLVE 840
  841 RGLAQWVDSC YASL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle