YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AG10B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	61	0.84
Transmembrane Helix	62	81	0.83
Non-Cytoplasmic	82	92	0.75
Transmembrane Helix	93	115	0.89
Cytoplasmic	116	130	0.83
Transmembrane Helix	131	151	0.85
Non-Cytoplasmic	152	156	0.60
Transmembrane Helix	157	185	0.59
Cytoplasmic	186	249	0.64
Transmembrane Helix	250	276	0.80
Non-Cytoplasmic	277	286	0.56
Transmembrane Helix	287	309	0.85
Cytoplasmic	310	324	0.54
Transmembrane Helix	325	344	0.86
Non-Cytoplasmic	345	368	0.50
Transmembrane Helix	369	386	0.80
Cytoplasmic	387	393	0.41
Transmembrane Helix	394	414	0.91
Non-Cytoplasmic	415	434	0.44
Transmembrane Helix	435	457	0.88
Cytoplasmic	458	474	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLEGYYFS AALSCTFLVS CLLFSAFSRA LREPYMDEIF HLPQAQRYCE GRFSLSQWDP  60
   61 MITTLPGLYL VSVGVVKPAS WILGWSEHVV CSIGMLRFVN LLFSVGNFYL LYLLFRKIQP 120
  121 RNKASSSIQR ILSTLTLAVF PTLYFFNFLY YTEAGSVFFT LFAYLMCLYG NHRTSALLGF 180
  181 CGFMFRQTNI IWAAFCAGHI IAQKCSEAWK TELQKKKEER LPPAKGPLSE LRRVLQFLLM 240
  241 YSMSLKNLSM LFLLTWPYML LLLAFFVFVV VNGGIVVGDR SSHEACLHFP QLFYFFSFTA 300
  301 FFSFPHLLSP TKVKTFLSLV WKRRVQFSVI TLVSVFLVWK FTYVHKYLLA DNRHYTFYVW 360
  361 KRVFQRHEIV KYLLVPAYMF AGWAVADSLK SKSIFWNLMF FVCLVASTVP QKLLEFRYFI 420
  421 LPYIIYRLNM PLPPISRLVC ELGCYAVVNF LTFYIFLNKT FQWSDSHDIQ RFMW