YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3395532
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIHNWILTF SIFREHPSTV FQIFTKCILV SSSFLLFYTL LPHGLLEDLM RRVGDSLVDL  60
   61 IVICEDSQGQ HLSSFCLFVA TLQSPFSAGV SGLCKAILLP SKQIHVMIQS VDLSIGITNS 120
  121 LTNEQLCGFG FFLNVKTNLH CSRIPLITNL FLSARHMSLD LENSVGSYHP RMIWSVTWQW 180
  181 SNQVPAFGET SLGFGMFQEK GQRHQNYEFP CRCIGTCGRG SVQCAGLISL PIAIEFTYQL 240
  241 TSSPTCIVRP WRFPNIFPLI ACILLLSMNS TLSLFSFSGG RSGYVLMLSS KYQDSFTSKT 300
  301 RNKRENSIFF LGLNTFTDFR HTINGPISPL MRSLTRSTVE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.79
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	76	0.76
Transmembrane Helix	77	99	0.67
Cytoplasmic	100	255	0.81
Transmembrane Helix	256	279	0.84
Non-Cytoplasmic	280	340	0.56