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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHRD_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLPAPPAP RLLLGLLLLG SRPAGGTGPE APALPIRSEK EPLPVRGAAG CSFGGKVYAL  60
   61 DETWHPDLGE PFGVMRCVLC ACEAPQWARR GRGPGRVSCK NIKPQCPTLA CRQPRQLPGH 120
  121 CCQTCPQDAE RSNLDPQPAG LVFEYPRDPE HRSYSDRGEP GTGERTRGDG HTEDFVALLT 180
  181 GPRTQAVARA RVSLLRSSLR FSISYQRLDR PSRVRFTDPT GNILFEHPAA PTQDGLVCGV 240
  241 WRAVPRLSVR LLRAEQLRVA LVTPTHPSEE VWGPLIWQGA LTAETFSAIL TLEDPLQRGV 300
  301 GGIALLTLSD TEDALHFLLL FRGLLGGLAH VPLKLQILHQ GQLLRELQAN ASAQEPGFAE 360
  361 VLPSLTDQEM DWLVLGELQM VLEKMGGPEL RISGYITTRQ SCDVLQSVLC GADALIPVQT 420
  421 GAAGSASFIL LGNGSLIYQV QVIGTGSEVV AMTLETKPQR KNQRTVLCHM AGLQLGGHMA 480
  481 VGVCSGLGAR GAHMLLQNEL FLNIGTKDFP DGELRGHVTA LCYSGHSAHY DRLPVPLAGA 540
  541 LVLPPVRSQA AGHAWLSLDT HCHLHYEVLL AGLGGSEQGT VTAHLLGPPG MPGPQRLLKG 600
  601 FYGSEAQGVV KDLEPVLLRH LTQGTASLLI TTKSNPRGEL RGQVHIASQC EVGGLRLASE 660
  661 GVRMSLAPNG EAATSPMLPA GPGPEAPVPA KHGSSGRPRD PNTCFFEGQQ RPHGARWAPN 720
  721 YDPLCSLCTC QRRTVICDPV VCPPPSCPHP VQALDQCCPV CPEKQRSRDL PSLPNLEPGE 780
  781 GCYFDGDRSW RAAGTRWHPV VPPFGLIKCA VCTCKGATGE VHCEKVQCPR LACAQPVRAN 840
  841 PTDCCKQCPV GSGTHAKLGD PMQADGPRGC RFAGQWFPEN QSWHPSVPPF GEMSCITCRC 900
  901 GAGVPHCERD DCSPPLSCGS GKESRCCSHC TAQRSSETRT LPELEKEAQR S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle