YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PYRD_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRQLRKRA LDAVIILGGG GLLFTSYLTA TGDDHFYAEY LMPGLQRLLD PESAHRLAVR  60
   61 VTSLGLLPRA TFQDSDMLEV KVLGHKFRNP VGIAAGFDKN GEAVDGLYKL GFGFVEVGSV 120
  121 TPQPQEGNPR PRVFRLPEDQ AVINRYGFNS HGLSVVEHRL RARQQKQAQL TADGLPLGIN 180
  181 LGKNKTSEDA AADYAEGVRT LGPLADYLVV NVSSPNTAGL RSLQGKTELR HLLSKVLQER 240
  241 DALKGTRKPA VLVKIAPDLT AQDKEDIASV ARELGIDGLI VTNTTVSRPV GLQGALRSET 300
  301 GGLSGKPLRD LSTQTIREMY ALTQGRIPII GVGGVSSGQD ALEKIQAGAS LVQLYTALIF 360
  361 LGPPVVVRVK RELEALLKER GFTTVTDAIG ADHRR

Type	Start	End	Confidence
Signal Peptide	1	32	0.68
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	395	0.98