YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACM4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MXNFTPVNGS SANQSVRLVT AAHNHLETVE MVFIATVTGS LSLVTVVGNI LVMLSIKVNR  60
   61 QLQTVNNYFL FSLGCADLII GAFSMNLYTL YIIKGYWPLG AVVCDLWLAL DYVVSNASVM 120
  121 NLLIISFDRY FCVTKPLTYP ARRTTKMAGL MIAAAWVLSF VLWAPAILFW QFVVGKRTVP 180
  181 DNQCFIQFLS NPAVTFGTAI AAFYLPVVIM TVLYIHISLA SRSRVHKHRP EGPKEKKAKT 240
  241 LAFLKSPLMK PSIKKPPPGG ASREELRNGK LEEAPPPALP PPPRPVPDKD TSNESSSGSA 300
  301 TQNTKERPPT ELSTAEATTP ALPAPTLQPR TLNPASKWSK IQIVTKQTGN ECVTAIEIVP 360
  361 ATPAGMRPAA NVARKFASIA RNQVRKKRQM AARERKVTRT IFAILLAFIL TWTPYNVMVL 420
  421 VNTFCQSCIP ERVWSIGYWL CYVNSTINPA CYALCNATFK KTFRHLLLCQ YRNIGTAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.94
Transmembrane Helix	32	54	0.91
Cytoplasmic	55	67	0.81
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	107	0.80
Transmembrane Helix	108	127	0.84
Cytoplasmic	128	147	0.83
Transmembrane Helix	148	169	0.90
Non-Cytoplasmic	170	194	0.92
Transmembrane Helix	195	217	0.90
Cytoplasmic	218	396	0.99
Transmembrane Helix	397	415	0.94
Non-Cytoplasmic	416	435	0.87
Transmembrane Helix	436	456	0.67
Cytoplasmic	457	478	0.67