YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPA3N_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLVTLELL MAGIGSALLC FPDCILGEDT LFHEDQDKGT QLDSLTLASI NTDFAFSLYK  60
   61 KLALRNPDKN VVFSPLSISA ALAVVSLGAK GNSMEEILEG LKFNLTETPE TEIHRGFGHL 120
  121 LQRLSQPRDE IQISTGNALF IEKRLQVLAE FQEKAKALYQ AEAFTADFQQ SREAKKLIND 180
  181 YVSKQTQGKI QGLITNLAKK TSMVLVNYIY FKGKWKVPFD PRDTFQSEFY SGKRRPVKVP 240
  241 MMKLEDLTTP YVRDEELNCT VVELKYTGNA SALFILPDQG KMQQVEASLQ PETLRRWKDS 300
  301 LRPSMIDELY LPKFSISADY NLEDVLPELG IKEVFSTQAD LSGITGDKDL MVSQVVHKAV 360
  361 LDVAETGTEA AAATGVKFVP MSAKLDPLII AFDRPFLMII SDTETAIAPF LAKIFNPK

Type	Start	End	Confidence
Signal Peptide	1	22	0.90
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	418	0.99