YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|133778333
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIGKTPHI FLLCPLIVAV ACAQSIRDPS NMPVVKDTVD RLMKGYDIRL RPDFGGAPVA  60
   61 VGMNIDIASI DMVSEVNMDY TLTMYFQQAW RDKRLSYSEI PLNLTLDNRV ADQLWVPDTY 120
  121 FLNDKRSFVH GVTVKNRMIR LHPDGTVLYG LRITTTAACM MDLRRYPLDE QNCTLEIESY 180
  181 GYTTDDIEFY WRGGDGAVSG VERIELPQFS IVDYKLISKN VVFSTGSYPR LSLSFKLKRN 240
  241 IGYFILQTYM PSIPITILSW VSFWINYDAS AARVALGITT VLTMTTINTH LRETLPKIPY 300
  301 VKAIDMYLMG CFVFVFLALL EYAFVNYIFF GRGPQRQKKA AEKAATANNE KLRPDPNKWL 360
  361 VGSVVQRDDA LYARMKQREI DGYDSMWGPI FAEDAALGLG DQRLKMTPDD IRLTTVEMKN 420
  421 EMGPSDLSRG LGDPRSTMLA YDSSTLQYRR AAMARQNYGH SALERHATQK KSRLRRRASQ 480
  481 LKVNTPDLSD VNSIDKWSRM IFPTLFSFFN IVYWLYYVH

Type	Start	End	Confidence
Signal Peptide	1	23	0.94
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	240	0.94
Transmembrane Helix	241	264	0.85
Cytoplasmic	265	270	0.74
Transmembrane Helix	271	291	0.85
Non-Cytoplasmic	292	305	0.83
Transmembrane Helix	306	330	0.88
Cytoplasmic	331	499	0.89
Transmembrane Helix	500	517	0.83
Non-Cytoplasmic	518	519	0.73