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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VP33B_RAT
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPHRLDAP ELPDFSMLKR LARDQLIYLL EQLPGKKDLF IEADLMSPLD RIANVSILKQ  60
   61 HEVDKLYKVE NKLTLSSNEQ LCFLVRPRIK TMRYIANLVN ADKLAGRVRK YKIILSPQKF 120
  121 YACEMVLEEE GVYGDVSCDE WAFSLLPLDV DLLSMELPEF FRDYFLEGDQ RWINTVAQAL 180
  181 HLLSTLYGPF PNCYGIGRCT KMSYDLWRKL EEEEDSETKG RRPEIGHIFL LDRDVDFVTA 240
  241 LCSQVVYEGL VDDTFRIKCG SVDFGPEVTS SDKSLKVLLN AEDKVFSEIR NEHFSNVFGF 300
  301 LSQKARNLQA QYDRRRGMDI KQMKNFVSQE LKGLKQEHRL LSLHIGACES IMKKKTKQDF 360
  361 QELIKTEHAL LEGFNIREST SYIEEHIDRQ VSPIESLRLM CLLSITENGL IPKDYRSLKT 420
  421 QYLQSYGPEH LLTFSNLRRA GLLTEQASGD TLTAVENKVS KLVTDKAAGK ITDAFSSLAK 480
  481 RSNFRAISKK LNLIPRVDGE YDLKVPRDMA YVFSGAYVPL SCRIIEQVLD RRSWQGLDEV 540
  541 VRLLNCSDFA FTDMAKEDKA SSESLRLILV VFLGGCTFSE ISALRFLGRE KGYRFIFLTT 600
  601 AVTNSARLME AMSEVKS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle