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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYCP1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQKPFTLF VPPRLSSSQV SAVKPQTAGG DSNYFKTVNK CTEGDFGVPL TMSSLSKNRE  60
   61 NIDTDPAFQK LSILPMLEQV ANSGSCHYQE GVNDSDFENS EPMSRLYSKL YKEAEKIKKW 120
  121 KVSIESELKQ KENKLQENRK IIEAQRKAIQ ELQFENEKVS LKLEEEIQEN KDLIKENNAT 180
  181 RHWCNLLKET CARSAEKTSK YEYEREETRQ VYVDLNNNIE KMILAFEELR VQAENARLEM 240
  241 HFKLKEDHEK IQHLEEEYQK EVNNKENQVS LLLIQSTEKE NKMKDLTFLL EESRDKANQL 300
  301 EEKTKLQDEN LKELNEKKDH LTSELEDIKM SMQRSMSTQK TLEEDLQIAT KTIYQLTEEK 360
  361 EAQMEELNKA KTTHSLVVTE LKATTCTLEE LLRTEQQRLE NNEDQLKLIT MELQKKSSEL 420
  421 EEMTKFKNNK EVELEELKTI LAEDQKLLDE KKQVEKLAEE LQGKEQELTF LLQTREKEIH 480
  481 DLEVQVTVTK TSEEHYLKQV EEMKTELEKE KLKNIELTAN SDMLLLENKK LVQEASDMVL 540
  541 ELKKHQEDII NCKKQEERML KQIETLEEKE MNLRDELESV RKEFIQQGDE VKCKLDKSEE 600
  601 NARSIEYEVL KKEKQMKILE NKCNNLKKQI ENKSKNIEEL HQENKALKKK SSAENKQLNA 660
  661 YEIKVNKLEL ELASTKQKFE EMINNYQKEI EIKKISEEKL LGEVEKAKAT VDEAVKLQKE 720
  721 IDLRCQHKIA EMVALMEKHK HQYDKIVEER DSELGLYKNR EQEQSSAKVA LETELSNIRN 780
  781 ELVSLKKQLE VEKEEKEKLK MEQENTAILT DKKDKKIQAS LLESPEATSW KFDSKTTPSQ 840
  841 NISRLSSSMD SGKSKDNRDS LRASAKSILS TTVTKEYTVK TPTKKSIYQR ENKYLPTGGS 900
  901 NKKRKTVFEF DVNSDSSETT DLLSLVSEED ISNRIYNNNT PDSHLLVKTP KQTPLSLSTP 960
  961 ASFTKFGSLK KMREDRWATI AKIDRKRRLK EAEKLFT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle