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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AMPE_RAT
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFAEEEPSK KYCIKGKHVA IICATVVAVG LIVGLSVGLT RSCEPGTTPA PSNPPPHTST  60
   61 ALPPQDQNVC PDSDDESGEW KNFRLPDFIQ PVHYDLEVKV LMEEDRYTGI VSISVNLSKD 120
  121 TRDLWLHIRE TRITKLPELR RPSGEQVPIR RCFEYKKQEY VVIQAEEDLA ATSGDSVYRL 180
  181 TIEFEGWLNG SLVGFYRTTY TEDGQTKSIA ATDHEPTDAR KSFPCFDEPN KKATYNISLI 240
  241 HPKEYSALSN MPVEKKETLD NDWKKTTFMK SVPMSTYLVC FAVHQFTSIQ RTSRSGKPLT 300
  301 VYVQPNQKQT AEYAANITKA VFDFFEDYFA MEYSLPKLDK IAIPDFGTGA MENWGLVTYR 360
  361 ETNLLYDPLL SASSNQQRVA SVVAHELVHQ WFGNIVTMDW WDDLWLNEGF ASFFEFLGVN 420
  421 HAEADWQMLS QVLLEDVLPV QEDDSLMSSH PVVVTVSTPA EITSVFDGIS YSKGASILRM 480
  481 LQDWITPEKF QKGCQIYLEN FKFKNAKTSD FWDSLEKASN QPVKEVMDTW TSQMGYPVVT 540
  541 VSGKQNVTQK RFLLDYKADP SQPPSALGYT WNIPIKWTEN GNSNITVYYR SNREGITLNA 600
  601 NLSGDGFLKI NPDHIGFYRV NYEAETWDWI AETLSSNHMN FSSADRSSFI DDAFALARAQ 660
  661 LLDYEKALNL TRYLTSEKDF LPWERVISAV SYIISMFEDD RELYPLIETY FRSQVKPIAD 720
  721 SLGWQDTGSH ITKLLRASVL GFACKMGAGE ALGNASQLFE AWLKGNESIP VNLRLLVYRY 780
  781 GMQNSGNEAA WNYTLEQYQK TSLAQEKEKL LYGLASVKDV TLLARYLEML KDPNIIKTQD 840
  841 VFTVIRYISY NSYGKSMAWN WIQLNWDYLV NRFTINDRYL GRIVTIAEPF NTELQLWQMQ 900
  901 SFFAKYPNAG AGAKPREQVL ETVKNNIEWL KLNRKSISEW FTSMP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle