YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71043730, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.71
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRWLAWA AAFSVFCVLK VSSLDTFLAA VYEHAVILPK VTLLPVSHSE ALALMNQNLD  60
   61 LLEGAILSAA KQGAHIIVTP EDGIYGVQFT RDTIYPYLED IPDPQVNWIP CDNPERFGST 120
  121 PVQERLSCLA KNNSIYVVAN MGDKKPCNTS DSHCPPDGRF QYNTDVVFDS RGKLVARYHK 180
  181 QNLFMGEEQF NAPPEPEVVT FDTPFGKFGI FTCFDILFHD PAVTLVTEFQ VDTILFPTAW 240
  241 MDVLPHLAAI EFHSAWAIGM GVNFLAANLH IPLRRMTGSG IYAPDSPRAF HYDRKTQEGK 300
  301 LLLAQLDSHP SHSPVNWTSY ASSVEAPPTE KEEFRSFVFF DEFTFVELKG ITGNYTVCQN 360
  361 DLCCHLSYQM SEKRADEVYA LGAFDGLHTV EGQYHLQICI LLKCKTTNLR TCGSSVDTAS 420
  421 TRFEMFSLSG TFGTRYVFPE VLLSEVKLAP GEFQVLSDGR LVSLKPTSGP VLTVGLFGRL 480
  481 YEKDWASNAS SDLIAHSLII MLILAPIIHY LC

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	492	0.78
Transmembrane Helix	493	511	0.63
Cytoplasmic	512	512	0.31