YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1197726
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	32	0.95
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	586	0.99
Transmembrane Helix	587	610	0.91
Cytoplasmic	611	624	0.91
Transmembrane Helix	625	645	0.94
Non-Cytoplasmic	646	653	0.84
Transmembrane Helix	654	674	0.89
Cytoplasmic	675	696	0.86
Transmembrane Helix	697	720	0.87
Non-Cytoplasmic	721	750	0.96
Transmembrane Helix	751	772	0.90
Cytoplasmic	773	787	0.86
Transmembrane Helix	788	807	0.95
Non-Cytoplasmic	808	815	0.81
Transmembrane Helix	816	838	0.85
Cytoplasmic	839	844	0.67
Transmembrane Helix	845	878	0.56
Non-Cytoplasmic	879	885	0.68
Transmembrane Helix	886	902	0.64
Cytoplasmic	903	983	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKGGWAWW WARLPLCLLL SLYAPWVPSS LGKPKGHPHM NSIRIDGDIT LGGLFPVHGR  60
   61 GSEGKACGEL KKEKGIHRLE AMLFALDRIN NDPDLLPNIT LGARILDTCS RDTHALEQSL 120
  121 TFVRALIEKD GTEVRCGSGG PPIITKPERV VGVIGASGSS VSIMVANILR LFKIPQISYA 180
  181 STAPDLSDNS RYDFFSRVVP SDTYQAQAMV DIVRALKWNY VSTLASEGSY GESGVEAFIQ 240
  241 KSRENGGVCI AQSVKIPREP KTGEFDKIIK RLLETSNARG IIIFANEDDI RRVLEAARRA 300
  301 NQTGHFFWMG SDSWGSKSAP VLRLEEVAEG AVTILPKRMS VRGFDRYFSS RTLDNNRRNI 360
  361 WFAEFWEDNF HCKLSRHALK KGSHIKKCTN RERIGQDSAY EQEGKVQFVI DAVYAMGHAL 420
  421 HAMHRDLCPG RVGLCPRMDP VDGTQLLKYI RNVNFSGIAG NPVTFNENGD APGRYDIYQY 480
  481 QLRNGSAEYK VIGSWTDHLH LRIERMQWPG SGQQLPRSIC SLPCQPGERK KTVKGMACCW 540
  541 HCEPCTGYQY QVDRYTCKTC PYDMRPTENR TSCQPIPIVK LEWDSPWAVL PLFLAVVGIA 600
  601 ATLFVVVTFV RYNDTPIVKA SGRELSYVLL AGIFLCYATT FLMIAEPDLG TCSLRRIFLG 660
  661 LGMSISYAAL LTKTNRIYRI FEQGKRSVSA PRFISPASQL AITFILISLQ LLGICVWFVV 720
  721 DPSHSVVDFQ DQRTLDPRFA RGVLKCDISD LSLICLLGYS MLLMVTCTVY AIKTRGVPET 780
  781 FNEAKPIGFT MYTTCIVWLA FIPIFFGTSQ SADKLYIQTT TLTVSVSLSA SVSLGMLYMP 840
  841 KVYIILFHIF PFCSWPSPAI CPAPCPSSLS CPIPAIIFSS VPPRSHFLPA FPLLGFIHQL 900
  901 FHHVAKEKKK GGGESPPTKK PKQKLILSVF RSAASSWWPV CPCGLQPARP PYPSAVCPAR 960
  961 PPARLALPAN DTEFSAWVFG DGL