YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B3A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	706	0.99
Transmembrane Helix	707	729	0.91
Cytoplasmic	730	741	0.80
Transmembrane Helix	742	763	0.88
Non-Cytoplasmic	764	793	0.89
Transmembrane Helix	794	815	0.90
Cytoplasmic	816	824	0.68
Transmembrane Helix	825	843	0.88
Non-Cytoplasmic	844	886	0.97
Transmembrane Helix	887	905	0.97
Cytoplasmic	906	920	0.87
Transmembrane Helix	921	942	0.90
Non-Cytoplasmic	943	975	0.97
Transmembrane Helix	976	997	0.88
Cytoplasmic	998	1017	0.82
Transmembrane Helix	1018	1040	0.90
Non-Cytoplasmic	1041	1048	0.61
Transmembrane Helix	1049	1063	0.51
Cytoplasmic	1064	1077	0.49
Transmembrane Helix	1078	1097	0.89
Non-Cytoplasmic	1098	1102	0.42
Transmembrane Helix	1103	1128	0.80
Cytoplasmic	1129	1147	0.57
Transmembrane Helix	1148	1167	0.73
Non-Cytoplasmic	1168	1170	0.46
Transmembrane Helix	1171	1191	0.69
Cytoplasmic	1192	1227	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANGVIPPPG GPSPLPQVRV PLEEPPLGPD VEEEDDDLGK TLAVSRFGDL ISKTPAWDPE  60
   61 KPSRSYSERD FEFHRHTSHH THHPLSARLP PPHKLRRLPP TSARHARRKR KKEKTSAPPS 120
  121 EGTPPIQEEG GAGAEEEEEE EEEEEGESEA EPVEPPPPGP PQKAKFSIGS DEDDSPGLSI 180
  181 KAPCAKALPS VGLPSDQSPQ RSGSSPSPRA RASRISTEKS RPWSPSASYD LRERLCPGSA 240
  241 LGNPGPEQRV PTDEAEAQML GSADLDDMKS HRLEDNPGVR RHLVKKPSRI QGGRGSPSGL 300
  301 APILRRKKKK KKLDRRPHEV FVELNELMLD RSQEPHWRET ARWIKFEEDV EEETERWGKP 360
  361 HVASLSFRSL LELRRTIAQG AALLDLEQTT LPGIAHLVVE TMIVSDQIRP EDRASVLRTL 420
  421 LLKHSHPNDD KDSGFFPRNP SSSSVNSVLG NHHPTPSHGP DGAVPTMADD LGEPAPLWPH 480
  481 DPDAKEKPLH MPGGDGHRGK SLKLLEKIPE DAEATVVLVG SVPFLEQPAA AFVRLSEAVL 540
  541 LESVLEVPVP VRFLFVMLGP SHTSTDYHEL GRSIATLMSD KLFHEAAYQA DDRQDLLGAI 600
  601 SEFLDGSIVI PPSEVEGRDL LRSVAAFQRE LLRKRREREQ TKVEMTTRGG YVAPGKELSL 660
  661 EMGGSEATSE DDPLQRTGSV FGGLVRDVKR RYPHYPSDLR DALHSQCVAA VLFIYFAALS 720
  721 PAITFGGLLG EKTEGLMGVS ELIVSTAVLG VLFSLLGAQP LLVVGFSGPL LVFEEAFFKF 780
  781 CRAQDLEYLT GRVWVGLWLV VFVLALVAAE GSFLVRYISP FTQEIFAFLI SLIFIYETFH 840
  841 KLYKVFTEHP LLPFYPPEEA LEPGLELNSS ALPPTEGPPG PRNQPNTALL SLILMLGTFL 900
  901 IAFFLRKFRN SRFLGGKARR VIGDFGIPIS ILVMVLVDYS ITDTYTQKLT VPTGLSVTSP 960
  961 HKRTWFIPPL GSARPFPPWM MVAAAVPALL VLILIFMETQ ITALIVSQKA RRLLKGSGFH1020
 1021 LDLLLIGSLG GLCGLFGLPW LTAATVRSVT HVNALTVMRT AIAPGDKPQI QEVREQRVTG1080
 1081 VLIASLVGLS IVMGAVLRRI PLAVLFGIFL YMGVTSLSGI QLSQRLLLIF MPAKHHPEQP1140
 1141 YVTKVKTWRM HLFTFIQLGC IALLWVVKST VASLAFPFLL LLTVPLRRCL LPRLFQDREL1200
 1201 QALDSEDAEP NFDEDGQDEY NELHMPV