YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GASR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLKLNRSV QGPGPGSGSS LCRPGVSLLN SSSAGNLSCD PPRIRGTGTR ELEMAIRITL  60
   61 YAVIFLMSVG GNVLIIVVLG LSRRLRTVTN AFLLSLAVSD LLLAVACMPF TLLPNLMGTF 120
  121 IFGTVICKAI SYLMGVSVSV STLNLVAIAL ERYSAICRPL QARVWQTRSH AARVILATWL 180
  181 LSGLLMVPYP VYTMVQPVGP RVLQCMHRWP SARVQQTWSV LLLLLLFFIP GVVIAVAYGL 240
  241 ISRELYLGLH FDGENDSETQ SRARNQGGLP GGAAPGPVHQ NGGCRPVTSV AGEDSDGCCV 300
  301 QLPRSRLEMT TLTTPTPGPV PGPRPNQAKL LAKKRVVRML LVIVLLFFLC WLPVYSVNTW 360
  361 RAFDGPGAQR ALSGAPISFI HLLSYVSACV NPLVYCFMHR RFRQACLDTC ARCCPRPPRA 420
  421 RPQPLPDEDP PTPSIASLSR LSYTTISTLG PG

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.87
Transmembrane Helix	58	81	0.90
Cytoplasmic	82	90	0.84
Transmembrane Helix	91	113	0.89
Non-Cytoplasmic	114	128	0.76
Transmembrane Helix	129	150	0.90
Cytoplasmic	151	170	0.91
Transmembrane Helix	171	192	0.91
Non-Cytoplasmic	193	218	0.93
Transmembrane Helix	219	241	0.94
Cytoplasmic	242	335	0.99
Transmembrane Helix	336	357	0.91
Non-Cytoplasmic	358	376	0.87
Transmembrane Helix	377	397	0.92
Cytoplasmic	398	452	0.99