YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LICH_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLGRVICF VVGILLSGGP TGTISAVDPE ANMNVTEIIM HWGYPEHSVQ TGDGYILGVH  60
   61 RIPHGRKNQF DKGPKPVVYL QWRHGFLADS SNWVTNIDNN SLGFILADAG FDVWMGNSRG 120
  121 NTWSRKHKTL SVSQDEYWAF SFDEMAKYDL PASINYILNK TGQEQLYNVG HSQGCTIGFI 180
  181 AFSQMPELAK KVKMFFALAP VLSLNFASGP MVKLGRLPDL LLEDLFGQKQ FLPQSAMVKW 240
  241 LSTHICTHVI MKELCANIFF LICGFNEKNL NMSRVDVYTT HCPAGTSVQN MVHWTQVVKY 300
  301 HKLQAFDWGS SDKNYFHYNQ SYPPLYSIKD MQLPTALWSG GKDWLADTSD INILLTEIPT 360
  361 LVYHKNIPEW DHLDFIWGLD APWRLYNEVV SLMKKYQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	397	0.99