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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19424232, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQHMAFIWG LCYMALVALC WRHGVTKAEE TVPLKTLQCY NDYIERIICS WADTEDAQGL  60
   61 VNLTLYHWLD KKQPMSCELS EDLMWSECPS SHRCVPRRCV LPYTQFSVSK EDYYSLQPDR 120
  121 DLSIHLVVPL AQHVQPPPPK DISISPSGDH FLLKWSVPLG DAQVSLLSQK DIQFEVAYKQ 180
  181 LQDSWEDASS LHTCNLWVTL EPKLFLPNSI YVARVRAQLA PGSSLSGRPS GWSPEVHWDS 240
  241 PTEDKARPQN LQCFFDGIQS LNCSWEVWTK VTDSVSFGLF YSSSPKAGEK KCSPVVKELQ 300
  301 ASRYTRYHCS LNVSDPAAHS QYTVSVKRLE QGKFIESFNH IQMNPPTLNL TKNRDSYSLH 360
  361 WETQKMSYPF IQHAFQVQYK KKLDRWEDSK TENLNHAHSM DLPQLEPGTS YCARVRVKTI 420
  421 PEYKGLWSEW SNECTWTTDW VMPTLWIVLI LVFLILTFLL ALRFGCIYGC KLYRRWKEKI 480
  481 PNPSKSLLFQ DGGKGLWPPG STVTFSSKNP TPQGPQNNLF SELQGVSYTH LEDNEVSPLT 540
  541 IEDPNIIRDP SSGPDTTPAA SSEPMEQSSN VQVDPPTLSG RPRKQLPSFD FNGPYLGPPQ 600
  601 SHSLPDLPGQ LVSPQGVGSL KPALPGSLEY MCLPPGGQVQ LVPLSQVMGQ GRDVDVQCGS 660
  661 SLETTESPSM ESRESPPVEL KEEEQEPRDN PVTLPISSGG PKDSKVASEY VTPADLVLTL 720
  721 PTEPLSTSLG PSLEVSSAQS PSLCLKLPRV PSESPALAPA VFEDYVELPP SMSQPAKSLP 780
  781 GNPAPPGPSS PAVSPGEPRE EVGAAPTHPE GLLVLQQVGD YCFLPGLGPS PLSPPSKPPS 840
  841 PGLCLETEDL DKDLSVKKLP YQPIPQVPAI QFFKSLKHQD YLSLPPWDNS QPGKVC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle