YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIAAT_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.87
Transmembrane Helix	123	142	0.70
Non-Cytoplasmic	143	146	0.54
Transmembrane Helix	147	168	0.79
Cytoplasmic	169	205	0.64
Transmembrane Helix	206	230	0.78
Non-Cytoplasmic	231	265	0.39
Transmembrane Helix	266	287	0.88
Cytoplasmic	288	305	0.60
Transmembrane Helix	306	324	0.87
Non-Cytoplasmic	325	341	0.62
Transmembrane Helix	342	363	0.89
Cytoplasmic	364	431	0.71
Transmembrane Helix	432	453	0.83
Non-Cytoplasmic	454	458	0.57
Transmembrane Helix	459	481	0.85
Cytoplasmic	482	489	0.78
Transmembrane Helix	490	510	0.94
Non-Cytoplasmic	511	525	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLRSKLT NVATSVSNKS QAKVSGMFAR MGFQAATDEE AVGFAHCDDL DFEHRQGLQM  60
   61 DILKSEGEPC GDEGAEPPVE GDIHYQRGGA PLPPSGSKDQ AVGAGGEFGG HDKPKITAWE 120
  121 AGWNVTNAIQ GMFVLGLPYA ILHGGYLGLF LIIFAAVVCC YTGKILIACL YEENEDGEVV 180
  181 RVRDSYVAIA NACCAPRFPT LGGRVVNVAQ IIELVMTCIL YVVVSGNLMY NSFPGLPVSQ 240
  241 KSWSIIATAV LLPCAFLKNL KAVSKFSLLC TLAHFVINIL VIAYCLSRAR DWAWEKVKFY 300
  301 IDVKKFPISI GIIVFSYTSQ IFLPSLEGNM QQPSEFHCMM NWTHIAACVL KGLFALVAYL 360
  361 TWADETKEVI TDNLPGSIRA VVNIFLVAKA LLSYPLPFFA AVEVLEKSLF QEGSRAFFPA 420
  421 CYGGDGRLKS WGLTLRCALV VFTLLMAIYV PHFALLMGLT GSLTGAGLCF LLPSLFHLRL 480
  481 LWRKLLWHQV FFDVAIFVIG GICSVSGFVH SLEGLIEAYR TNAED