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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPG7_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALLLLRA LRQSPEPGPW RLWAQLSGRS PGLFSGAGGR RPYVVRGTPI GLAAAGGHTP  60
   61 QSLLLRILTP SFEGVSGLLL KRHIVPSAIR LWQLSGSTLY FNTSGLKQKN KDDDKPKGKA 120
  121 PEDDEEERRR KEREDQMYRE RLRTLFIIAI VMSLLNSLST SGGSISWADF VNEMLAKGEV 180
  181 QRVQVVPESD VVEVYLHPGA VVFGRPRLAL MYRMQVANID KFEEKLRAAE DELNIESKDR 240
  241 IPVSYKRTGF FGNALYALGM TAVGLAILWY VFRLAGMTGR EGGFSAFNQL KMARFTIVDG 300
  301 KTGKGVSFQD VAGMHEAKLE VREFVDYLKS PERFLQLGAK VPKGALLLGP PGCGKTLLAK 360
  361 AVATEAQVPF LAMAGPEFVE VIGGLGAARV RSLFKEARAR APCIVYIDEI DAVGKKRSTS 420
  421 MSGFSNTEEE QTLNQLLVEM DGMGTADHVI VLASTNRADV LDNALMRPGR LDRHVFIDLP 480
  481 TLQERREIFE QHLKGLKLTQ PSSFYSQRLA ELTPGFSGTA KKSKILSKEE QRVVAFHESG 540
  541 HALVGWLLEH TEAVMKVSIA PRTNAALGFS QMLPRDQYLF TKEQLFERMC MALGGRAAEA 600
  601 ISFSRVTSGA QDDLRKVTRI AYSMVKQFGM APSIGPVSFP EAQEGLVGIG RRPFSQGLQQ 660
  661 MMDHEARLLV ARAYRHTEKV LLDNLDKLQA LANALLEKEV INYEDIEALI GPPPHGPKKM 720
  721 IAPQKWIDAE KEKQASGEEE APAP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle