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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNTN4_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPWELLVL QSFMLCLADD YTLHGPVFVQ EPSHVMFPLD SEEKKVKLSC EVKGNPKPHI  60
   61 RWKLNGTDVD IGMDFRYSVV EGSLLINNPN KTQDSGTYQC IATNSFGTIV SREAKLQFAY 120
  121 LENFKTRTRS TVSVRRGQGM VLLCGPPPHS GELSYAWIFN EHPSYQDNRR FVSQETGNLY 180
  181 IAKVEKADVG NYTCVVTNTV TSHQVLGPPT PLILRNDGVM GEYEPKIEVQ FPETVPAEKG 240
  241 STVKLECFAL GNPVPTILWR RADGKPIARK ARRHKSSGIL EIPNFQQEDA GSYECVAENS 300
  301 RGKNIAKGQV TFYAQPNWVQ IINDIHVAME ESVFWECKAN GRPKPTYRWL KNGDPLLTRE 360
  361 RIQIEQGTLN ITIVNLSDAG MYQCVAENKH GVIYASAELS VIAESPDFSR TLLKRVTLVK 420
  421 VGGEVVIECK PKASPRPVYT WRKGREILRE NERITISEDG NLRIINVTKS DAGSYTCIAT 480
  481 NHFGTASSTG NVVVKDPTKV MVPPSSMDVT VGESIVLPCQ VTHDHSLDIV FTWTFNGHLI 540
  541 DFDKDGDHFE RVGGQDSAGD LMIRNIQLKH AGKYVCMVQT SVDKLSAAAD LIVRGPPGPP 600
  601 EAVTIDEITD TTAQLSWRPG PDNHSPITMY VIQARTPFSV GWQAVSTVPE LVDGKTFTAT 660
  661 VVGLNPWVEY EFRTVAANVI GIGEPSRPSE KRRTEEALPE VTPANVSGGG GSKSELVITW 720
  721 ETVPEELQNG RGFGYVVAFR PHGKMIWMLT VLASADASRY VFRNESVRPF SPFEVKVGVF 780
  781 NNKGEGPFSP TTLVYSAEEE PTKPPASIFA RSLSATDIEV FWASPIGKNR GRIQGYEVKY 840
  841 WRHDDKEENA RKIRTVGNQT STKITNLKGN ALYHLSVKAY NSAGTGPSSA AVNVTTRKPP 900
  901 PSQPPGNIIW NSSDSKIILN WDQVKALDNE SEVKGYKVLY RWNRQSSTSV IETNKTSVEL 960
  961 SLPFDEDYII EIKPFSDGGD GSSSEQIRIP KISNSYARGS GASTSNACTL SAISTIMISL1020
 1021 TARSSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle