YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCC9_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.62
Transmembrane Helix	30	50	0.89
Non-Cytoplasmic	51	70	0.58
Transmembrane Helix	71	92	0.88
Cytoplasmic	93	101	0.59
Transmembrane Helix	102	123	0.93
Non-Cytoplasmic	124	129	0.56
Transmembrane Helix	130	152	0.80
Cytoplasmic	153	164	0.55
Transmembrane Helix	165	188	0.85
Non-Cytoplasmic	189	304	0.45
Transmembrane Helix	305	323	0.53
Cytoplasmic	324	343	0.68
Transmembrane Helix	344	366	0.76
Non-Cytoplasmic	367	371	0.52
Transmembrane Helix	372	393	0.54
Cytoplasmic	394	420	0.76
Transmembrane Helix	421	445	0.74
Non-Cytoplasmic	446	448	0.59
Transmembrane Helix	449	471	0.85
Cytoplasmic	472	528	0.99
Transmembrane Helix	529	553	0.88
Non-Cytoplasmic	554	571	0.82
Transmembrane Helix	572	593	0.89
Cytoplasmic	594	976	0.99
Transmembrane Helix	977	999	0.90
Non-Cytoplasmic	1000	1029	0.92
Transmembrane Helix	1030	1053	0.88
Cytoplasmic	1054	1114	0.61
Transmembrane Helix	1115	1145	0.74
Non-Cytoplasmic	1146	1545	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSFCGNNI SSYNIYHGVL QNPCFVDALN LVPHVFLLFI TFPILFIGWG SQSSKVQIHH  60
   61 NTWLHFPGHN LRWILTFALL FVHVCEIAEG IVSDSQRASR HLHLFMPAVM GFVATTTSIV 120
  121 YYHNIETSNF PKLLLALFLY WVMAFITKTI KLVKYWQLGW GMSDLRFCIT GVMVILNGLL 180
  181 MAVEINVIRV RRYVFFMNPQ KVKPPEDLQD LGVRFLQPFV NLLSKATYWW MNTLIISAHR 240
  241 KPIDLKAIGK LPIAMRAVTN YVCLKEAYEE QKKKAADHPN RTPSIWLAMY RAFGRPILLS 300
  301 STFRYLADLL GFAGPLCISG IVQRVNEPKN NTTRFSETLS SKEFLENAHV LAVLLFLALI 360
  361 LQRTFLQASY YVTIETGINL RGALLAMIYN KILRLSTSNL SMGEMTLGQI NNLVAIETNQ 420
  421 LMWFLFLCPN LWAMPVQIIM GVILLYNLLG SSALVGAAVI VLLAPIQYFI ATKLAEAQKS 480
  481 TLDYSTERLK KTNEILKGIK LLKLYAWEHI FCKSVEETRM KELSSLKTFA LYTSLSIFMN 540
  541 AAIPIAAVLA TFVTHAYASG NNLKPAEAFA SLSLFHILVT PLFLLSTVVR FAVKAIISVQ 600
  601 KLNEFLLSDE IGEDSWRTGE GTLPFESCKK HTGVQSKPIN RKQPGRYHLD NYEQARRLRP 660
  661 AETEDVAIKV TNGYFSWGSG LATLSNIDIR IPTGQLTMIV GQVGCGKSSL LLAILGEMQT 720
  721 LEGKVYWNNV NESEPSFEAT RSRSRYSVAY AAQKPWLLNA TVEENITFGS SFNRQRYKAV 780
  781 TDACSLQPDI DLLPFGDQTE IGERGINLSG GQRQRICVAR ALYQNTNIVF LDDPFSALDI 840
  841 HLSDHLMQEG ILKFLQDDKR TVVLVTHKLQ YLTHADWIIA MKDGSVLREG TLKDIQTKDV 900
  901 ELYEHWKTLM NRQDQELEKD MEADQTTLER KTLRRAMYSR EAKAQMEDED EEEEEEEDED 960
  961 DNMSTVMRLR TKMPWKTCWW YLTSGGFFLL FLMIFSKLLK HSVIVAIDYW LATWTSEYSI1020
 1021 NDPGKADQTF YVAGFSILCG AGIFLCLVTS LTVEWMGLTA AKNLHHNLLN KIILGPIRFF1080
 1081 DTTPLGLILN RFSADTNIID QHIPPTLESL TRSTLLCLSA IGMISYATPV FLIALAPLGV1140
 1141 AFYFIQKYFR VASKDLQELD DSTQLPLLCH FSETAEGLTT IRAFRHETRF KQRMLELTDT1200
 1201 NNIAYLFLSA ANRWLEVRTD YLGACIVLTA SIASISGSSN SGLVGLGLLY ALTITNYLNW1260
 1261 VVRNLADLEV QMGAVKKVNS FLTMESENYE GTMDPSQVPE HWPQEGEIKI HDLCVRYENN1320
 1321 LKPVLKHVKA YIKPGQKVGI CGRTGSGKSS LSLAFFRMVD IFDGKIVIDG IDISKLPLHT1380
 1381 LRSRLSIILQ DPILFSGSIR FNLDPECKCT DDRLWEALEI AQLKNMVKSL PGGLDATVTE1440
 1441 GGENFSVGQR QLFCLARAFV RKSSILIMDE ATASIDMATE NILQKVVMTA FADRTVVTIA1500
 1501 HRVSSIMDAG LVLVFSEGIL VECDTGPNLL QHKNGLFSTL VMTNK