YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1082041
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.69
Transmembrane Helix	9	25	0.32
Non-Cytoplasmic	26	32	0.52
Transmembrane Helix	33	53	0.56
Cytoplasmic	54	61	0.69
Transmembrane Helix	62	82	0.80
Non-Cytoplasmic	83	98	0.86
Transmembrane Helix	99	122	0.87
Cytoplasmic	123	141	0.87
Transmembrane Helix	142	163	0.92
Non-Cytoplasmic	164	178	0.83
Transmembrane Helix	179	202	0.86
Cytoplasmic	203	257	0.95
Transmembrane Helix	258	276	0.84
Non-Cytoplasmic	277	308	0.85
Transmembrane Helix	309	328	0.92
Cytoplasmic	329	339	0.79
Transmembrane Helix	340	359	0.91
Non-Cytoplasmic	360	453	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XEFCERFSYY GMRALLVLYF RNFLGWDDDL STAIYHTSVA LRYLTPILGA LIADSWLGKF  60
   61 KTIVSLSIVY TIGQAVISVS SINDLTDHDH DGSPNNLPLH VALSMIGLGL IGLGTGGIKP 120
  121 CVSAFGGDQF GEGQEKQGNP VFSIFYLAIN AGSLLSTIIT PILRVQQCGI HSQQACYPLA 180
  181 FGVPAALMAV ALIVFVLGSG MYKKFQPQGN IMGKVAKCIG FAIKNRFRHR SKAFPKREHW 240
  241 LDWAKEKYDE RLISQIKMVT KVMFLYIPLP MSWALFDQQG SRWTLQATTM TGKIGTIEIQ 300
  301 PDQMQTVNAI LIVIMVPIVD AVVYPLIAKC GFNYTSLKKM TVGMFLASMA FVVAAIVQVE 360
  361 IDKTLPVFPS GNQVQIKVLN IGNNDMAVYF PGKNVTVAQM SQTDTFMTFD VDQLTSINVS 420
  421 SPGSPGVTTV AHEFEPGHRH TLLVWGPNNY RVV