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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PCSK6_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRAPPAPG PRPPPRAAGR HGLSPLAPRP WRWLLLLALP AVCSALPPPR PVYTNHWAVQ  60
   61 VLGGPGAADR VAAAHGYLNL GQIGNLDDYY HFYHSKTFKR STLSSRGPHT FLRMDPQVKW 120
  121 LQQQEVKRRV KRQARSDSLY FNDPIWSNMW YMHCADKNSR CRSEMNVQAA WKRGYTGKNV 180
  181 VVTILDDGIE RNHPDLAPNY DSYASYDVNG NDYDPSPRYD ASNENKHGTR CAGEVAASAN 240
  241 NSYCIVGIAY NAKIGGIRML DGDVTDVVEA KSLGIRPNYI DIYSASWGPD DDGKTVDGPG 300
  301 RLAKQAFEYG IKKGRQGLGS IFVWASGNGG REGDHCSCDG YTNSIYTISV SSTTENGHKP 360
  361 WYLEECASTL ATTYSSGAFY ERKIVTTDLR QRCTDGHTGT SVSAPMVAGI IALALEANNQ 420
  421 LTWRDVQHLL VKTSRPAHLK ASDWKVNGAG HKVSHLYGFG LVDAEALVLE ARKWTAVPSQ 480
  481 HMCVATADKR PRSIPVVQVL RTTALTNACA DHSDQRVVYL EHVVVRISIS HPRRGDLQIH 540
  541 LISPSGTKSQ LLAKRLLDFS NEGFTNWEFM TVHCWGEKAE GEWTLEVQDI PSQVRNPEKQ 600
  601 GKLKEWSLIL YGTAEHPYRT FSSHQSRSRM LELSVPEQEP LKAEGPPPQA ETPEEEEEYT 660
  661 GVCHPECGDK GCDGPSADQC LNCVHFSLGN SKTNRKCVSE CPLGYFGDTA ARRCRRCHKG 720
  721 CETCTGRSPT QCLSCRRGFY HHQETNTCVT LCPAGLYADE SQRLCLRCHP SCQKCVDEPE 780
  781 KSTVCKEGFS LARGSCIPDC EPGTYFDSEL IRCGECHHTC RTCVGPSREE CIHCAKSFHF 840
  841 QDWKCVPACG EGFYPEEMPG LPHKVCRRCD ENCLSCEGSS RNCSRCKAGF TQLGTSCITN 900
  901 HTCSNADETF CEMVKSNRLC ERKLFIQFCC RTCLLAG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle