YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4454309, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.91
Transmembrane Helix	54	77	0.89
Non-Cytoplasmic	78	96	0.80
Transmembrane Helix	97	120	0.86
Cytoplasmic	121	129	0.74
Transmembrane Helix	130	153	0.91
Non-Cytoplasmic	154	190	0.78
Transmembrane Helix	191	208	0.72
Cytoplasmic	209	226	0.83
Transmembrane Helix	227	247	0.89
Non-Cytoplasmic	248	265	0.89
Transmembrane Helix	266	285	0.93
Cytoplasmic	286	302	0.76
Transmembrane Helix	303	324	0.90
Non-Cytoplasmic	325	333	0.82
Transmembrane Helix	334	358	0.85
Cytoplasmic	359	374	0.90
Transmembrane Helix	375	400	0.85
Non-Cytoplasmic	401	414	0.79
Transmembrane Helix	415	441	0.81
Cytoplasmic	442	539	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDPPKADP KGVVAVDPTA NCGSGLKSRE DQGAKAGGCC SSRDQVCRCL RANLLVLLTV  60
   61 AAAVAGVVLG LGVSAAGGAE ALGHARFTAF AFPGELLLRL LEMIILPLVV CSLIGGAASL 120
  121 DPSALGRLGA WALLFFLVTT LLSSALGVAL ALALKPGAAF AAINSSVVDS SVHRAPTKEV 180
  181 LDSFLELLRN MFPSNLVSAS AAFRIPCGAC PQRSNATMDQ PHCEMKMNIL GLVVFAIVFG 240
  241 VALRKLGPEG ELLIRFFNSF NDATMVLVSW IMWYAPIGIL FLVAGKIVEM KDIRQLFIGL 300
  301 GKYIVCCLLG HAIHGLLVLP LIYFLFTRKN PYRFLWGIVT PLATAFGTSS SSATLPLMMK 360
  361 CVEEKNGVAK HISRFILPIG ATVNMDGAAL FQCVAAVFIA QLNGMSLDFV KIITILVTAT 420
  421 ASSVGAAGIP AGGVLTLAII LEAISLPVKD ISLILAVDWL VDRSCTVLNV EGDAFGAGLL 480
  481 QSYVDRTKMP SSEPELIQVK NDVSLKPLPL ATEEGNPLLK QCREPSGDSS ATCEKESVM