YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCKB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.57
Transmembrane Helix	50	72	0.91
Cytoplasmic	73	92	0.51
Transmembrane Helix	93	114	0.75
Non-Cytoplasmic	115	199	0.47
Transmembrane Helix	200	224	0.86
Cytoplasmic	225	235	0.55
Transmembrane Helix	236	255	0.85
Non-Cytoplasmic	256	281	0.70
Transmembrane Helix	282	302	0.92
Cytoplasmic	303	322	0.71
Transmembrane Helix	323	344	0.84
Non-Cytoplasmic	345	392	0.73
Transmembrane Helix	393	413	0.82
Cytoplasmic	414	420	0.50
Transmembrane Helix	421	441	0.79
Non-Cytoplasmic	442	463	0.61
Transmembrane Helix	464	484	0.87
Cytoplasmic	485	492	0.55
Transmembrane Helix	493	512	0.77
Non-Cytoplasmic	513	687	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIVGLREG SPRKPVPLQE LWRPCPRIRR NIQGSLEWLK ERLFRVGEDW YFLVALGVLM  60
   61 ALISYAMNFA IGRVVRAHKW LYREIGDGHL LRYLSWTVYP VALLSFSSGF SQSITPSSGG 120
  121 SGIPEVKTIL TGVILEDYLD IKNFGAKVVG LSCTLATGST IFLGKLGPFV HLSVMIAAYL 180
  181 GRVRTKTVGE PENKTKEMEL LAAGAAVGVA TVFAAPISGV LFSIEVMSSH FSVWDYWRGF 240
  241 FAATCGAFMF HLLAVFNSEQ ETITSIYKTS FPVDIPFDLP EIFFFVALGA ICGILSCGYN 300
  301 YCQRTSLFFL KSNGFTSKLL ATSKPLYSAL AAVVLASITY PPGVGRFMAS RLSMSEYLET 360
  361 LFDNNSWALM TKNSSPPWSA EPDPQNLWLE WCHPQMTVFG TLVFFLVMKF WMLILATTIP 420
  421 IPAGYFLPIF VYGAAIGRLF GEVLSLAFPE GIVAGGKVSP IMPGAYALAG AAAFSGAVTH 480
  481 TLSTALLAFE VSGQIVHALP VLMAVLAANA ICQSYQPSFY DGTIIVKKLP YLPWIRGRKI 540
  541 GSHLVTVGHF MNCTLTTLAK DMPLEEVIKV VISTDVTQYP LVETTESQVL VGIVKRTHLV 600
  601 QSLHTDSASW APGQQPCLQD ILANGCPTQP VTLQLSTETS LHETHNLFEL LNLQLLFVTS 660
  661 RGRAVGSVSW VELKKAISTL TNPPAPK