YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTL1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCCSSASAA QSSKREWKPL EDRSCTDIPW LLLFVLFCIG MGFICGFSVA TGAAARLVSG  60
   61 YDSYGNICGQ RNAKLEAIAN SGLDHTHRKY VFFLDPCNLD LINRKIKSMA LCVAACPRQE 120
  121 LKTLSDVQKF AEINGSALCS YNIKPSEYTL TAKSSAFCPK LPVPASAPIP FFHRCAPVNI 180
  181 SCYAKFAEAL ITFVSDNSVL HRLISGVMTS KEIILGLCLL SLVLSMILMV IIRYISRVLV 240
  241 WILTILVILG SLGGTGVLWW LYAKQRRSPK ETVIPEQLQI AEDNLRALLI YAISATVFTV 300
  301 ILFLIMLVMR KRVALTIALF HVAGKVFIHL PLLVFQPFWT FFALVLFWAY WIMTLLFLGT 360
  361 TGSAVQNEQG FVEYKISGPL QYMWWYHVVG LIWISEFILA CQQMTVAGAV VTYYFTRDKR 420
  421 NLPFTPILAS VNRLIRYHLG TVAKGSFIIT LVKIPRMILM YIHSQLKGKE NACARCMLKS 480
  481 CICCLWCLEK CLSYLNQNAY TATAINSTNF CTSAKDAFVI LVENALRVAA INTVGDFMLF 540
  541 LGKVLIVCST GLAGIMLLNY QQDYTVWVLP LIIVCLFAFL VAHCFLSIYE MVVDVLFLCF 600
  601 AIDTKYNDGS PGREFYMDKV LMEFVENSRK AMKEAGKGGA ADARKLKPMA SGASSA

Type	Start	End	Confidence
Cytoplasmic	1	29	0.50
Transmembrane Helix	30	54	0.87
Non-Cytoplasmic	55	212	0.50
Transmembrane Helix	213	232	0.96
Cytoplasmic	233	238	0.42
Transmembrane Helix	239	263	0.89
Non-Cytoplasmic	264	286	0.50
Transmembrane Helix	287	308	0.93
Cytoplasmic	309	325	0.34
Transmembrane Helix	326	360	0.74
Non-Cytoplasmic	361	388	0.61
Transmembrane Helix	389	415	0.77
Cytoplasmic	416	536	0.77
Transmembrane Helix	537	558	0.90
Non-Cytoplasmic	559	565	0.73
Transmembrane Helix	566	587	0.93
Cytoplasmic	588	656	0.86