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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: KCNQ1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTASSPPNA ERKRAGWGRL LGARRGSAGL AKKCPFSLEL AEGGPTGGTV YAPIAPTGAP  60
   61 GLAPPMSPPV SPVPAPADLG PRPRVSLDPR VSIYSTRRPL LARTHIQGRV YNFLERPTGW 120
  121 KCFVYHFTVF LIVLVCLIFS VLSTIEQYAA LATGTLFWME IVLVVFFGTE YVVRLWSAGC 180
  181 RSKYVGIWGR LRFARKPISI IDLIVVVASM VVLCVGSKGQ VFATSAIRGI RFLQILRMLH 240
  241 VDRQGGTWRL LGSVVFIHRQ ELITTLYIGF LGLIFSSYFV YLAEKDAVNE SGRIEFGSYA 300
  301 DALWWGVVTV TTIGYGDKVP QTWVGKTIAS CFSVFAISFF ALPAGILGSG FALKVQQKQR 360
  361 QKHFNRQIPA AASLIQTAWR CYAAENPDSS TWKIYVRKPA RSHTLLSPSP KPKKSVMVKK 420
  421 KKFKLDKDNG LSPGEKIFNV PHITCDPPED RRPDHFSIDG YDSSVRKSPT LLEVSTPHFL 480
  481 RTNSFAEDLD LEGETLLTPI THVSQLRDHH RATIKVIRRM QYFVAKKKFQ QARKPYDVRD 540
  541 VIEQYSQGHL NLMVRIKELQ RRLDQSIGKP SLFIPISEKS KDRGSNTIGA RLNRVEDKVT 600
  601 QLDQRLVIIT DMLHQLLSLQ QGGPTCNNRS QVVASDERGS INPELFLPSN SLPTYEQLTV 660
  661 PQTGPDEGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle