YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.99
Transmembrane Helix	125	146	0.92
Non-Cytoplasmic	147	212	0.96
Transmembrane Helix	213	234	0.91
Cytoplasmic	235	255	0.86
Transmembrane Helix	256	277	0.85
Non-Cytoplasmic	278	312	0.58
Transmembrane Helix	313	337	0.81
Cytoplasmic	338	347	0.56
Transmembrane Helix	348	366	0.60
Non-Cytoplasmic	367	386	0.87
Transmembrane Helix	387	407	0.91
Cytoplasmic	408	422	0.83
Transmembrane Helix	423	443	0.89
Non-Cytoplasmic	444	497	0.93
Transmembrane Helix	498	518	0.91
Cytoplasmic	519	525	0.74
Transmembrane Helix	526	548	0.85
Non-Cytoplasmic	549	573	0.79
Transmembrane Helix	574	608	0.61
Cytoplasmic	609	818	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEQLFHRG YYRNSYNSIT SASSDEELLD GAGAIMDFQT SEDDNLLDGD TAAGTHYTMT  60
   61 NGGSINSSTH LLDLLDEPIP GVGTYDDFHT IDWVREKCKD RERHRRINSK KKESAWEMTK 120
  121 SLYDAWSGWL VVTLTGLASG ALAGLIDIAA DWMTDLKEGI CLSALWYNHE QCCWGSNETT 180
  181 FEERDKCPQW KTWAELIIGQ AEGPGSYIMN YIMYIFWALS FAFLAVSLVK VFAPYACGSG 240
  241 IPEIKTILSG FIIRGYLGKW TLMIKTITLV LAVASGLSLG KEGPLVHVAC CCGNIFSYLF 300
  301 PKYSTNEAKK REVLSAASAA GVSVAFGAPI GGVLFSLEEV SYYFPLKTLW RSFFAALVAA 360
  361 FVLRSINPFG NSRLVLFYVE YHTPWYLFEL FPFILLGVFG GLWGAFFIRA NIAWCRRRKS 420
  421 TKFGKYPVLE VIIVAAITAV IAFPNPYTRL NTSELIKELF TDCGPLESSS LCDYRNDMNA 480
  481 SKIVDDIPDR PAGVGVYSAI WQLCLALIFK IIMTVFTFGI KVPSGLFIPS MAIGAIAGRI 540
  541 VGIAVEQLAY YHHDWFIFKE WCEVGADCIT PGLYAMVGAA ACLGGVTRMT VSLVVIVFEL 600
  601 TGGLEYIVPL MAAVMTSKWV GDAFGREGIY EAHIRLNGYP FLDAKEEFTH TTLAADVMRP 660
  661 RRSDPPLAVL TQDNMTVDDI ENMINETSYN GFPVIMSKES QRLVGFALRR DLTIAIESAR 720
  721 KKQEGVVGSS RVCFAQHTPS LPAESPRPLK LRSILDMSPF TVTDHTPMEI VVDIFRKLGL 780
  781 RQCLVTHNGR LLGIITKKDI LRHMAQTANQ DPASIMFN