YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.57
Transmembrane Helix	16	37	0.71
Non-Cytoplasmic	38	123	0.49
Transmembrane Helix	124	141	0.49
Cytoplasmic	142	151	0.82
Transmembrane Helix	152	170	0.92
Non-Cytoplasmic	171	177	0.71
Transmembrane Helix	178	199	0.93
Cytoplasmic	200	211	0.80
Transmembrane Helix	212	232	0.90
Non-Cytoplasmic	233	239	0.71
Transmembrane Helix	240	257	0.87
Cytoplasmic	258	325	0.92
Transmembrane Helix	326	345	0.93
Non-Cytoplasmic	346	354	0.81
Transmembrane Helix	355	374	0.91
Cytoplasmic	375	383	0.75
Transmembrane Helix	384	404	0.90
Non-Cytoplasmic	405	412	0.72
Transmembrane Helix	413	433	0.86
Cytoplasmic	434	445	0.71
Transmembrane Helix	446	465	0.65
Non-Cytoplasmic	466	471	0.60
Transmembrane Helix	472	493	0.87
Cytoplasmic	494	536	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFSEILDRV GSMGPFQYLH VTLLALPVLG IANHNLLQIF TATTPVHHCR PPPNASIGPW  60
   61 VLPLDPNGKP EKCLRFVHLP NASLPNDTQR ATEPCLDGWI YNSTRDTIVI EWDLVCSSNK 120
  121 LKEMAQSIFM AGILVGGPVI GELSDRFGRK PILTWSYLML AASGSGAAFS PSLPVYMIFR 180
  181 FLCGCSISGI SLSTVILNVE WVPTSMRAIS STSIGYCYTI GQFILSGLAY AIPQWRWLQL 240
  241 TSSAPFFIFS LLSWWVPESI RWLVLSGKYS KALKTLQRVA TFNGKKEEGK KLTIEELKFN 300
  301 LQKDITSAKV KYGLSDLFRV SILRRVTFCL SLAWFSTGFA YYSLAMGVEE FGVNIYILQI 360
  361 IFGGVDIPAK FITILSLSYL GRRITQSFLL LLAGGAILAL IFVPSEMQLL RTALAVFGKG 420
  421 CLSGSFSCLF LYTSELYPTV LRQTGMGISN VWARVGSMIA PLVKITGELQ PFIPNVIFGT 480
  481 TALLGGSAAF FLLETLNRPL PETIEDIQNW HKQVQKTKQE SEAEKASQII PLKTGG