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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: APLP2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATGTAAAA ATGKLLVLLL LGLTAPAAAL AGYIEALAAN AGTGFAVAEP QIAMFCGKLN  60
   61 MHVNIQTGKW EPDPTGTKSC LGTKEEVLQY CQEIYPELQI TNVMEANQPV NIDSWCRRDK 120
  121 KQCRSHIVIP FKCLVGEFVS DVLLVPENCQ FFHQERMEVC EKHQRWHTVV KEACLTEGMT 180
  181 LYSYGMLLPC GVDQFHGTEY VCCPQTKVVD SDSTMSKEEE EEEEEDEEED YALDKSEFPT 240
  241 EADLEDFTEA AADEDEDEEE EEEEEGEEVV EDRDYYYDSF KGDDYNEENP TEPSSDGTIS 300
  301 DKEIAHDVKA VCSQEAMTGP CRAVMPRWYF DLSKGKCVRF IYGGCGGNRN NFESEDYCMA 360
  361 VCKTMIPPTP LPTNDVDVYF ETSADDNEHA RFQKAKEQLE IRHRSRMDRV KKEWEEAELQ 420
  421 AKNLPKAERQ TLIQHFQAMV KALEKEAASE KQQLVETHLA RVEAMLNDRR RIALENYLAA 480
  481 LQSDPPRPHR ILQALRRYVR AENKDRLHTI RHYQHVLAVD PEKAAQMKSQ VMTHLHVIEE 540
  541 RRNQSLSLLY KVPYVAQEIQ EEIDELLQEQ RADMDQFTSS ISENPVDVRV SSEESEEIPP 600
  601 FHPFHPFPSL SENEDTQPEL YHPMKKGSGM AEQDGGLIGA EEKVINSKNK MDENMVIDET 660
  661 LDVKEMIFNA ERVGGLEEEP DSVGPLREDF SLSSSALIGL LVIAVAIATV IVISLVMLRK 720
  721 RQYGTISHGI VEVHPMLTPE ERHLNKMQNH GYENPTYKYL EQMQI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle